Gene annotation
| Transcriptome id | Sobic.002G098800.2,Sobic.002G098800.1 |
|---|---|
| Synonym | Sb02g008120 |
| Functional annotation | peroxiredoxin, putative, expressed |
| UniProt | A0A1B6QA87 , H0I497 |
| Pfam | PF00578 |
| Panther DB | PTHR10681 PTHR10681:SF91 PTHR10681:SF91 PTHR10681 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0016209antioxidant activity GO:0016209antioxidant activity GO:0016491oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT1G21350 : Thioredoxin superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g15670.2,LOC_Os07g15670.1 : peroxiredoxin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a013622 |
| Brachypodium | PNT76766 , KQK20208 , KQK20209 , KQK20205 , KQK20204 , KQK20207 , KQK20206 , KQK20210 |
| Barley | - |
| Wheat | TraesCS3B02G535400 , TraesCS2B02G127500 , TraesCS2A02G109500 , TraesCS2A02G109500 , TraesCS2D02G109700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G069000 | ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 2 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 3 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 4 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 5 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 6 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 7 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 8 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 9 | Sobic.004G274100 | expressed protein | - |
| 10 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 11 | Sobic.003G199800 | expressed protein | - |
| 12 | Sobic.002G030500 | Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed | - |
| 13 | Sobic.004G023200 | Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed | - |
| 14 | Sobic.009G125400 | FZL, putative, expressed | - |
| 15 | Sobic.001G102800 | expressed protein | - |
| 16 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 17 | Sobic.001G536800 | peptidyl-prolyl cis-trans isomerase, putative, expressed | K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B) |
| 18 | Sobic.007G004800 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 19 | Sobic.010G153900 | Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed | K00797: speE, SRM, spermidine synthase |
| 20 | Sobic.006G147300 | -(PubMedID : 26465154)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
