Gene annotation
Transcriptome id Sobic.001G069000.1
Synonym Sb01g006240
Functional annotation ribose-5-phosphate isomerase A, putative, expressed
UniProt A0A1B6QHP8
Pfam PF06026
Panther DB PTHR11934 PTHR11934:SF8
NCBI CDD KOG3075; Ribose 5-phosphate isomerase
KEGG Orthology K01807; ribose 5-phosphate isomerase A
Gene Ontology GO:0009052; pentose-phosphate shunt, non-oxidative branch GO:0004751ribose-5-phosphate isomerase activity


Orthologs (automatic annotation)
TAIR AT5G44520 : NagB/RpiA/CoA transferase-like superfamily protein
RAP-DB (Rice) LOC_Os03g56869.1 : ribose-5-phosphate isomerase A, putative, expressed
MaizeGDB (Corn) Zm00025a016652
Brachypodium KQK12901
Barley -
Wheat TraesCS5D02G424700
Populus -


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cDNA sequences
Sobic.001G069000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
2 Sobic.009G125400 FZL, putative, expressed -
3 Sobic.002G098800 peroxiredoxin, putative, expressed -
4 Sobic.006G010900 expressed protein -
5 Sobic.001G536800 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
6 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
7 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
8 Sobic.001G314200 expressed protein -
9 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
10 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
11 Sobic.003G137100 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
12 Sobic.007G085800 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
13 Sobic.009G085500 hydrolase, alpha/beta fold family protein, putative, expressed -
14 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
15 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
16 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
17 Sobic.008G116300 expressed protein -
18 Sobic.004G274100 expressed protein -
19 Sobic.001G102800 expressed protein -
20 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -


Gene co-expression network
sample Sobic001G069000 Sobic001G069000 Sobic003G412900 Sobic003G412900 Sobic001G069000--Sobic003G412900 Sobic009G125400 Sobic009G125400 Sobic001G069000--Sobic009G125400 Sobic002G098800 Sobic002G098800 Sobic001G069000--Sobic002G098800 Sobic006G010900 Sobic006G010900 Sobic001G069000--Sobic006G010900 Sobic001G536800 Sobic001G536800 Sobic001G069000--Sobic001G536800 Sobic004G308700 Sobic004G308700 Sobic001G069000--Sobic004G308700 Sobic003G387100 Sobic003G387100 Sobic001G069000--Sobic003G387100 Sobic001G314200 Sobic001G314200 Sobic001G069000--Sobic001G314200 Sobic004G272100 Sobic004G272100 Sobic001G069000--Sobic004G272100 Sobic003G412900--Sobic001G069000 Sobic003G412900--Sobic003G387100 Sobic003G412900--Sobic001G314200 Sobic008G102000 Sobic008G102000 Sobic003G412900--Sobic008G102000 Sobic006G093900 Sobic006G093900 Sobic003G412900--Sobic006G093900 Sobic009G059300 Sobic009G059300 Sobic003G412900--Sobic009G059300 Sobic001G168800 Sobic001G168800 Sobic003G412900--Sobic001G168800 Sobic006G101500 Sobic006G101500 Sobic003G412900--Sobic006G101500 Sobic009G030900 Sobic009G030900 Sobic003G412900--Sobic009G030900 Sobic009G125400--Sobic001G069000 Sobic009G125400--Sobic004G308700 Sobic009G125400--Sobic004G272100 Sobic007G004800 Sobic007G004800 Sobic009G125400--Sobic007G004800 Sobic008G021300 Sobic008G021300 Sobic009G125400--Sobic008G021300 Sobic007G009200 Sobic007G009200 Sobic009G125400--Sobic007G009200 Sobic001G102800 Sobic001G102800 Sobic009G125400--Sobic001G102800 Sobic010G201700 Sobic010G201700 Sobic009G125400--Sobic010G201700 Sobic006G272900 Sobic006G272900 Sobic009G125400--Sobic006G272900 Sobic002G098800--Sobic001G069000 Sobic002G098800--Sobic004G308700 Sobic002G098800--Sobic008G021300 Sobic002G098800--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic002G098800--Sobic008G066100 Sobic004G035500 Sobic004G035500 Sobic002G098800--Sobic004G035500 Sobic002G098800--Sobic010G201700 Sobic003G303700 Sobic003G303700 Sobic002G098800--Sobic003G303700 Sobic004G274100 Sobic004G274100 Sobic002G098800--Sobic004G274100 Sobic006G010900--Sobic001G069000 Sobic006G010900--Sobic003G387100 Sobic006G210400 Sobic006G210400 Sobic006G010900--Sobic006G210400 Sobic003G160800 Sobic003G160800 Sobic006G010900--Sobic003G160800 Sobic007G085800 Sobic007G085800 Sobic006G010900--Sobic007G085800 Sobic006G207800 Sobic006G207800 Sobic006G010900--Sobic006G207800 Sobic008G116300 Sobic008G116300 Sobic006G010900--Sobic008G116300 Sobic003G077400 Sobic003G077400 Sobic006G010900--Sobic003G077400 Sobic006G010900--Sobic003G412900 Sobic001G536800--Sobic001G069000 Sobic009G085500 Sobic009G085500 Sobic001G536800--Sobic009G085500 Sobic003G137100 Sobic003G137100 Sobic001G536800--Sobic003G137100 Sobic006G103400 Sobic006G103400 Sobic001G536800--Sobic006G103400 Sobic001G536800--Sobic002G098800 Sobic001G536800--Sobic009G125400 Sobic001G536800--Sobic008G066100 Sobic001G536800--Sobic004G308700 Sobic001G041800 Sobic001G041800 Sobic001G536800--Sobic001G041800 Sobic004G308700--Sobic004G272100 Sobic004G308700--Sobic008G066100 Sobic001G519800 Sobic001G519800 Sobic004G308700--Sobic001G519800 Sobic004G308700--Sobic010G201700 Sobic001G425400 Sobic001G425400 Sobic004G308700--Sobic001G425400 Sobic003G431700 Sobic003G431700 Sobic004G308700--Sobic003G431700 Sobic004G308700--Sobic001G102800 Sobic004G308700--Sobic007G004800 Sobic002G051100 Sobic002G051100 Sobic004G308700--Sobic002G051100 Sobic003G387100--Sobic009G059300 Sobic004G336200 Sobic004G336200 Sobic003G387100--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic003G387100--Sobic008G073100 Sobic003G387100--Sobic006G207800 Sobic003G387100--Sobic003G160800 Sobic005G110400 Sobic005G110400 Sobic003G387100--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G387100--Sobic004G012900 Sobic003G387100--Sobic003G412900 Sobic010G035400 Sobic010G035400 Sobic003G387100--Sobic010G035400 Sobic001G314200--Sobic003G412900 Sobic001G314200--Sobic009G030900 Sobic001G314200--Sobic001G069000 Sobic006G067400 Sobic006G067400 Sobic001G314200--Sobic006G067400 Sobic001G314200--Sobic003G387100 Sobic001G314200--Sobic006G093900 Sobic001G314200--Sobic009G059300 Sobic008G171300 Sobic008G171300 Sobic001G314200--Sobic008G171300 Sobic008G188600 Sobic008G188600 Sobic001G314200--Sobic008G188600 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic004G272100--Sobic001G519800 Sobic004G272100--Sobic002G051100 Sobic003G002300 Sobic003G002300 Sobic004G272100--Sobic003G002300 Sobic004G272100--Sobic008G102000 Sobic009G043000 Sobic009G043000 Sobic004G272100--Sobic009G043000 Sobic004G272100--Sobic001G102800 Sobic004G272100--Sobic008G066100
Octagon: transcription factors


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