Gene annotation
Transcriptome id Sobic.004G175500.4,Sobic.004G175500.1
Synonym TAPX, Sb04g022560
Functional annotation OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed
UniProt A0A194YQ83 , A0A194YQ88
Pfam PF00141
Panther DB PTHR31356 PTHR31356:SF11
NCBI CDD -
KEGG Orthology K00434; L-ascorbate peroxidase
Gene Ontology GO:0006979; response to oxidative stress GO:0004601peroxidase activity


Orthologs (automatic annotation)
TAIR AT1G77490 : thylakoidal ascorbate peroxidase
RAP-DB (Rice) LOC_Os02g34810.1 : OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed
MaizeGDB (Corn) Zm00025a011327 , Zm00025a020635
Brachypodium KQJ99866 , KQJ99867 , KQJ82690 , PNT61121 , PNT61122 , PNT61123 , PNT61124
Barley HORVU4Hr1G030920.1 , HORVU4Hr1G030910.2 , HORVU4Hr1G030910.1 , HORVU6Hr1G076260.5 , HORVU6Hr1G076260.4 , HORVU6Hr1G076260.1 , HORVU6Hr1G076260.3 , HORVU6Hr1G076260.2 , HORVU2Hr1G075970.14 , HORVU2Hr1G075970.15 , HORVU2Hr1G075970.12 , HORVU2Hr1G075970.13 , HORVU2Hr1G075970.11 , HORVU2Hr1G075970.9 , HORVU2Hr1G075970.5 , HORVU2Hr1G075970.6 , HORVU2Hr1G075970.7 , HORVU2Hr1G075970.1 , HORVU2Hr1G075970.2 , HORVU2Hr1G075970.3 , HORVU2Hr1G002010.5 , HORVU2Hr1G002010.4 , HORVU2Hr1G002010.7 , HORVU2Hr1G002010.6 , HORVU2Hr1G002010.1 , HORVU2Hr1G002010.3 , HORVU2Hr1G002010.2 , HORVU2Hr1G002010.8
Wheat TraesCS6A02G225100 , TraesCS6D02G397200 , TraesCS6D02G397200 , TraesCS6B02G462300 , TraesCS6B02G462300 , TraesCS6B02G462300 , TraesCS6A02G225100 , TraesCS2A02G305600 , TraesCS2D02G304100 , TraesCS2A02G305700 , TraesCS6A02G412900 , TraesCS2B02G322400
Populus -


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cDNA sequences
Sobic.004G175500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
2 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
3 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
4 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
5 Sobic.004G249800 expressed protein -
6 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
7 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.006G103400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
10 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D
11 Sobic.002G033800 expressed protein -
12 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
13 Sobic.007G223500 expressed protein -
14 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
15 Sobic.003G197400 Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed K06444: lcyE, lycopene epsilon-cyclase
16 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
17 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
18 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
19 Sobic.008G134800 shikimate kinase, putative, expressed -
20 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic004G175500 Sobic004G175500 Sobic003G387800 Sobic003G387800 Sobic004G175500--Sobic003G387800 Sobic004G343300 Sobic004G343300 Sobic004G175500--Sobic004G343300 Sobic007G004800 Sobic007G004800 Sobic004G175500--Sobic007G004800 Sobic002G198600 Sobic002G198600 Sobic004G175500--Sobic002G198600 Sobic004G249800 Sobic004G249800 Sobic004G175500--Sobic004G249800 Sobic007G071500 Sobic007G071500 Sobic004G175500--Sobic007G071500 Sobic001G029100 Sobic001G029100 Sobic004G175500--Sobic001G029100 Sobic006G103400 Sobic006G103400 Sobic004G175500--Sobic006G103400 Sobic009G030900 Sobic009G030900 Sobic004G175500--Sobic009G030900 Sobic003G387800--Sobic004G175500 Sobic003G387800--Sobic007G004800 Sobic003G002300 Sobic003G002300 Sobic003G387800--Sobic003G002300 Sobic009G140600 Sobic009G140600 Sobic003G387800--Sobic009G140600 Sobic010G005500 Sobic010G005500 Sobic003G387800--Sobic010G005500 Sobic003G387800--Sobic009G030900 Sobic007G052400 Sobic007G052400 Sobic003G387800--Sobic007G052400 Sobic009G143100 Sobic009G143100 Sobic003G387800--Sobic009G143100 Sobic008G134800 Sobic008G134800 Sobic003G387800--Sobic008G134800 Sobic004G343300--Sobic004G249800 Sobic003G132100 Sobic003G132100 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic001G448400 Sobic001G448400 Sobic004G343300--Sobic001G448400 Sobic004G343300--Sobic007G071500 Sobic010G241000 Sobic010G241000 Sobic004G343300--Sobic010G241000 Sobic006G234100 Sobic006G234100 Sobic004G343300--Sobic006G234100 Sobic004G343300--Sobic004G175500 Sobic002G033800 Sobic002G033800 Sobic004G343300--Sobic002G033800 Sobic007G004800--Sobic003G387800 Sobic001G519800 Sobic001G519800 Sobic007G004800--Sobic001G519800 Sobic008G021300 Sobic008G021300 Sobic007G004800--Sobic008G021300 Sobic007G004800--Sobic004G175500 Sobic007G004800--Sobic003G002300 Sobic002G051100 Sobic002G051100 Sobic007G004800--Sobic002G051100 Sobic004G272100 Sobic004G272100 Sobic007G004800--Sobic004G272100 Sobic007G004800--Sobic007G052400 Sobic006G093900 Sobic006G093900 Sobic007G004800--Sobic006G093900 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic002G198600--Sobic004G175500 Sobic009G091800 Sobic009G091800 Sobic002G198600--Sobic009G091800 Sobic002G198600--Sobic003G132100 Sobic003G386300 Sobic003G386300 Sobic002G198600--Sobic003G386300 Sobic002G198600--Sobic009G030900 Sobic006G248200 Sobic006G248200 Sobic002G198600--Sobic006G248200 Sobic010G011800 Sobic010G011800 Sobic002G198600--Sobic010G011800 Sobic004G311100 Sobic004G311100 Sobic002G198600--Sobic004G311100 Sobic004G249800--Sobic004G343300 Sobic004G249800--Sobic006G105900 Sobic004G249800--Sobic007G071500 Sobic004G249800--Sobic006G234100 Sobic004G035500 Sobic004G035500 Sobic004G249800--Sobic004G035500 Sobic003G359100 Sobic003G359100 Sobic004G249800--Sobic003G359100 Sobic004G249800--Sobic008G134800 Sobic004G249800--Sobic003G132100 Sobic005G042000 Sobic005G042000 Sobic004G249800--Sobic005G042000 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic007G071500--Sobic004G343300 Sobic002G316700 Sobic002G316700 Sobic007G071500--Sobic002G316700 Sobic007G071500--Sobic008G134800 Sobic007G071500--Sobic004G035500 Sobic003G052500 Sobic003G052500 Sobic007G071500--Sobic003G052500 Sobic001G177000 Sobic001G177000 Sobic007G071500--Sobic001G177000 Sobic001G029100--Sobic004G175500 Sobic001G029100--Sobic009G030900 Sobic001G029100--Sobic009G143100 Sobic001G029100--Sobic003G387800 Sobic001G029100--Sobic002G033800 Sobic001G029100--Sobic007G004800 Sobic001G029100--Sobic002G198600 Sobic001G029100--Sobic006G093900 Sobic001G029100--Sobic007G071500 Sobic006G103400--Sobic004G343300 Sobic004G023200 Sobic004G023200 Sobic006G103400--Sobic004G023200 Sobic006G103400--Sobic004G175500 Sobic003G197400 Sobic003G197400 Sobic006G103400--Sobic003G197400 Sobic006G103400--Sobic002G033800 Sobic006G103400--Sobic004G249800 Sobic001G041800 Sobic001G041800 Sobic006G103400--Sobic001G041800 Sobic006G103400--Sobic010G241000 Sobic004G235200 Sobic004G235200 Sobic006G103400--Sobic004G235200 Sobic009G030900--Sobic010G005500 Sobic010G277600 Sobic010G277600 Sobic009G030900--Sobic010G277600 Sobic009G030900--Sobic007G052400 Sobic009G183700 Sobic009G183700 Sobic009G030900--Sobic009G183700 Sobic009G030900--Sobic003G387800 Sobic009G059300 Sobic009G059300 Sobic009G030900--Sobic009G059300 Sobic009G030900--Sobic003G002300 Sobic008G171300 Sobic008G171300 Sobic009G030900--Sobic008G171300 Sobic009G030900--Sobic004G175500
Octagon: transcription factors


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