Gene annotation
Transcriptome id Sobic.003G197400.1
Synonym Sb03g026020, LUT2,LUT2
Functional annotation Protein lycopene epsilon cyclase (Os) (PubMedID : 27208977)
- (PubMedID : 29017446)
lycopene epsilon cyclase, chloroplast precursor, putative, expressed
UniProt C5XNU3
Pfam PF05834
Panther DB PTHR13789 PTHR13789:SF207
NCBI CDD -
KEGG Orthology K06444; lcyE, lycopene epsilon-cyclase
Gene Ontology GO:0016705; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0016117carotenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G57030 : Lycopene beta/epsilon cyclase protein
RAP-DB (Rice) LOC_Os01g39960.1 : lycopene epsilon cyclase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a038391
Brachypodium KQK08441
Barley HORVU3Hr1G050430.20 , HORVU3Hr1G050430.21 , HORVU3Hr1G050430.22 , HORVU3Hr1G050430.19 , HORVU3Hr1G050430.18 , HORVU3Hr1G050430.15 , HORVU3Hr1G050430.14 , HORVU3Hr1G050430.17 , HORVU3Hr1G050430.16 , HORVU3Hr1G050430.10 , HORVU3Hr1G050430.13 , HORVU3Hr1G050430.12
Wheat TraesCS3D02G211700 , TraesCS3A02G208800 , TraesCS3B02G239100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D
2 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
3 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
4 Sobic.006G222700 OsCHL Chloroplastic lipocalin, expressed -
5 Sobic.006G103400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
7 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
8 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
9 Sobic.002G033800 expressed protein -
10 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
11 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
12 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
13 Sobic.001G379700 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
14 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
15 Sobic.004G249800 expressed protein -
16 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
17 Sobic.003G433900 expressed protein -
18 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
19 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
20 Sobic.002G297300 expressed protein -


Gene co-expression network
sample Sobic003G197400 Sobic003G197400 Sobic001G041800 Sobic001G041800 Sobic003G197400--Sobic001G041800 Sobic003G132100 Sobic003G132100 Sobic003G197400--Sobic003G132100 Sobic004G343300 Sobic004G343300 Sobic003G197400--Sobic004G343300 Sobic006G222700 Sobic006G222700 Sobic003G197400--Sobic006G222700 Sobic006G103400 Sobic006G103400 Sobic003G197400--Sobic006G103400 Sobic007G029300 Sobic007G029300 Sobic003G197400--Sobic007G029300 Sobic004G175500 Sobic004G175500 Sobic003G197400--Sobic004G175500 Sobic001G448400 Sobic001G448400 Sobic003G197400--Sobic001G448400 Sobic002G033800 Sobic002G033800 Sobic003G197400--Sobic002G033800 Sobic001G041800--Sobic003G197400 Sobic001G041800--Sobic004G175500 Sobic001G041800--Sobic006G222700 Sobic001G041800--Sobic003G132100 Sobic001G041800--Sobic006G103400 Sobic001G041800--Sobic004G343300 Sobic002G198600 Sobic002G198600 Sobic001G041800--Sobic002G198600 Sobic001G415400 Sobic001G415400 Sobic001G041800--Sobic001G415400 Sobic004G068300 Sobic004G068300 Sobic001G041800--Sobic004G068300 Sobic003G132100--Sobic004G343300 Sobic008G051000 Sobic008G051000 Sobic003G132100--Sobic008G051000 Sobic003G132100--Sobic003G197400 Sobic006G264201 Sobic006G264201 Sobic003G132100--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic003G132100--Sobic004G238500 Sobic003G433900 Sobic003G433900 Sobic003G132100--Sobic003G433900 Sobic004G249800 Sobic004G249800 Sobic003G132100--Sobic004G249800 Sobic003G132100--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic003G132100--Sobic009G091800 Sobic004G343300--Sobic004G249800 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic004G343300--Sobic001G448400 Sobic007G071500 Sobic007G071500 Sobic004G343300--Sobic007G071500 Sobic010G241000 Sobic010G241000 Sobic004G343300--Sobic010G241000 Sobic006G234100 Sobic006G234100 Sobic004G343300--Sobic006G234100 Sobic004G343300--Sobic004G175500 Sobic004G343300--Sobic002G033800 Sobic002G030200 Sobic002G030200 Sobic006G222700--Sobic002G030200 Sobic006G222700--Sobic003G197400 Sobic006G222700--Sobic010G241000 Sobic006G222700--Sobic001G041800 Sobic010G000500 Sobic010G000500 Sobic006G222700--Sobic010G000500 Sobic006G222700--Sobic007G029300 Sobic006G222700--Sobic004G343300 Sobic005G042000 Sobic005G042000 Sobic006G222700--Sobic005G042000 Sobic002G329600 Sobic002G329600 Sobic006G222700--Sobic002G329600 Sobic006G103400--Sobic004G343300 Sobic004G023200 Sobic004G023200 Sobic006G103400--Sobic004G023200 Sobic006G103400--Sobic004G175500 Sobic006G103400--Sobic003G197400 Sobic006G103400--Sobic002G033800 Sobic006G103400--Sobic004G249800 Sobic006G103400--Sobic001G041800 Sobic006G103400--Sobic010G241000 Sobic004G235200 Sobic004G235200 Sobic006G103400--Sobic004G235200 Sobic007G029300--Sobic002G329600 Sobic007G029300--Sobic006G264201 Sobic002G339200 Sobic002G339200 Sobic007G029300--Sobic002G339200 Sobic007G029300--Sobic001G448400 Sobic001G078000 Sobic001G078000 Sobic007G029300--Sobic001G078000 Sobic007G029300--Sobic004G238500 Sobic007G029300--Sobic006G234100 Sobic007G029300--Sobic010G241000 Sobic003G099400 Sobic003G099400 Sobic007G029300--Sobic003G099400 Sobic003G387800 Sobic003G387800 Sobic004G175500--Sobic003G387800 Sobic004G175500--Sobic004G343300 Sobic007G004800 Sobic007G004800 Sobic004G175500--Sobic007G004800 Sobic004G175500--Sobic002G198600 Sobic004G175500--Sobic004G249800 Sobic004G175500--Sobic007G071500 Sobic001G029100 Sobic001G029100 Sobic004G175500--Sobic001G029100 Sobic004G175500--Sobic006G103400 Sobic009G030900 Sobic009G030900 Sobic004G175500--Sobic009G030900 Sobic001G448400--Sobic006G234100 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic001G448400--Sobic002G329600 Sobic010G109500 Sobic010G109500 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G448400--Sobic001G078000 Sobic002G033800--Sobic004G343300 Sobic002G033800--Sobic003G132100 Sobic002G033800--Sobic004G023200 Sobic002G033800--Sobic007G071500 Sobic002G152700 Sobic002G152700 Sobic002G033800--Sobic002G152700 Sobic002G033800--Sobic006G103400 Sobic002G033800--Sobic004G175500 Sobic002G033800--Sobic001G448400 Sobic002G033800--Sobic001G029100
Octagon: transcription factors


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