Gene annotation
Transcriptome id Sobic.001G448400.1
Synonym Sb01g042150, MENG
Functional annotation UbiE/COQ5 methyltransferase family protein (Sb) (PubMedID : 27208977)
methyltransferase domain containing protein, putative, expressed
UniProt C5WRS5
Pfam PF08241
Panther DB PTHR10108 PTHR10108:SF706
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G23360 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os10g10180.1 : methyltransferase domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020997 , Zm00025a017910
Brachypodium KQJ96377 , KQJ96376
Barley HORVU6Hr1G073180.2 , HORVU6Hr1G073180.3 , HORVU6Hr1G073180.1 , HORVU6Hr1G073180.6 , HORVU6Hr1G073180.5 , HORVU6Hr1G073180.4
Wheat TraesCS6B02G323800 , TraesCS6A02G293400 , TraesCS6D02G274300 , TraesCS6D02G274300
Populus -


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cDNA sequences
Sobic.001G448400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
2 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
3 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
4 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
5 Sobic.010G109500 expressed protein -
6 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
7 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
8 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
9 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
10 Sobic.007G212400 thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed -
11 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
12 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
13 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
14 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
15 Sobic.002G033800 expressed protein -
16 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
17 Sobic.009G091850 - -
18 Sobic.007G116950 - -
19 Sobic.004G249800 expressed protein -
20 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G448400 Sobic001G448400 Sobic006G234100 Sobic006G234100 Sobic001G448400--Sobic006G234100 Sobic002G339200 Sobic002G339200 Sobic001G448400--Sobic002G339200 Sobic004G343300 Sobic004G343300 Sobic001G448400--Sobic004G343300 Sobic002G329600 Sobic002G329600 Sobic001G448400--Sobic002G329600 Sobic010G109500 Sobic010G109500 Sobic001G448400--Sobic010G109500 Sobic006G264201 Sobic006G264201 Sobic001G448400--Sobic006G264201 Sobic007G029300 Sobic007G029300 Sobic001G448400--Sobic007G029300 Sobic010G241000 Sobic010G241000 Sobic001G448400--Sobic010G241000 Sobic001G078000 Sobic001G078000 Sobic001G448400--Sobic001G078000 Sobic006G234100--Sobic010G109500 Sobic006G234100--Sobic001G448400 Sobic006G234100--Sobic002G339200 Sobic006G234100--Sobic004G343300 Sobic006G234100--Sobic010G241000 Sobic003G052500 Sobic003G052500 Sobic006G234100--Sobic003G052500 Sobic006G234100--Sobic002G329600 Sobic006G234100--Sobic001G078000 Sobic006G234100--Sobic006G264201 Sobic002G339200--Sobic002G329600 Sobic002G339200--Sobic006G264201 Sobic002G339200--Sobic001G078000 Sobic002G339200--Sobic006G234100 Sobic009G234600 Sobic009G234600 Sobic002G339200--Sobic009G234600 Sobic002G339200--Sobic010G241000 Sobic002G339200--Sobic001G448400 Sobic002G339200--Sobic010G109500 Sobic002G339200--Sobic007G029300 Sobic004G249800 Sobic004G249800 Sobic004G343300--Sobic004G249800 Sobic003G132100 Sobic003G132100 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic004G343300--Sobic001G448400 Sobic007G071500 Sobic007G071500 Sobic004G343300--Sobic007G071500 Sobic004G343300--Sobic010G241000 Sobic004G343300--Sobic006G234100 Sobic004G175500 Sobic004G175500 Sobic004G343300--Sobic004G175500 Sobic002G033800 Sobic002G033800 Sobic004G343300--Sobic002G033800 Sobic002G329600--Sobic006G264201 Sobic002G329600--Sobic002G339200 Sobic002G329600--Sobic001G078000 Sobic002G329600--Sobic010G241000 Sobic002G329600--Sobic009G234600 Sobic002G329600--Sobic007G029300 Sobic002G297300 Sobic002G297300 Sobic002G329600--Sobic002G297300 Sobic002G030200 Sobic002G030200 Sobic002G329600--Sobic002G030200 Sobic002G329600--Sobic001G448400 Sobic010G109500--Sobic006G234100 Sobic010G109500--Sobic001G448400 Sobic006G011100 Sobic006G011100 Sobic010G109500--Sobic006G011100 Sobic003G209800 Sobic003G209800 Sobic010G109500--Sobic003G209800 Sobic010G276400 Sobic010G276400 Sobic010G109500--Sobic010G276400 Sobic010G109500--Sobic002G339200 Sobic002G000500 Sobic002G000500 Sobic010G109500--Sobic002G000500 Sobic010G109500--Sobic003G052500 Sobic010G109500--Sobic004G343300 Sobic006G264201--Sobic002G329600 Sobic006G264201--Sobic002G339200 Sobic004G238500 Sobic004G238500 Sobic006G264201--Sobic004G238500 Sobic006G264201--Sobic009G234600 Sobic006G264201--Sobic007G029300 Sobic006G264201--Sobic010G241000 Sobic006G264201--Sobic001G078000 Sobic006G264201--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic006G264201--Sobic009G091800 Sobic007G029300--Sobic002G329600 Sobic007G029300--Sobic006G264201 Sobic007G029300--Sobic002G339200 Sobic007G029300--Sobic001G448400 Sobic007G029300--Sobic001G078000 Sobic007G029300--Sobic004G238500 Sobic007G029300--Sobic006G234100 Sobic007G029300--Sobic010G241000 Sobic003G099400 Sobic003G099400 Sobic007G029300--Sobic003G099400 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic010G241000--Sobic002G030200 Sobic001G078000--Sobic002G329600 Sobic001G078000--Sobic006G105900 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic001G078000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic001G078000--Sobic005G042000 Sobic001G078000--Sobic006G264201 Sobic006G264900 Sobic006G264900 Sobic001G078000--Sobic006G264900 Sobic001G078000--Sobic007G029300
Octagon: transcription factors


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