Gene annotation
Transcriptome id Sobic.002G033800.1
Synonym OHP, Sb02g002950
Functional annotation expressed protein
UniProt C5X9I7
Pfam -
Panther DB PTHR14154:SF20 PTHR14154
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02120 : one helix protein
RAP-DB (Rice) LOC_Os05g22730.1 : expressed protein
MaizeGDB (Corn) Zm00025a012605 , Zm00025a009488
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G033800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
2 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
3 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
4 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
5 Sobic.002G152700 rhodanese-like, putative, expressed -
6 Sobic.006G103400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
8 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
9 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
11 Sobic.004G249800 expressed protein -
12 Sobic.003G433900 expressed protein -
13 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
14 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
15 Sobic.003G197400 Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed K06444: lcyE, lycopene epsilon-cyclase
16 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
17 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
18 Sobic.007G212400 thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed -
19 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
20 Sobic.001G198800 -(PubMedID : 26465154)@invertase/pectin methylesterase inhibitor family protein, putative, expressed -


Gene co-expression network
sample Sobic002G033800 Sobic002G033800 Sobic004G343300 Sobic004G343300 Sobic002G033800--Sobic004G343300 Sobic003G132100 Sobic003G132100 Sobic002G033800--Sobic003G132100 Sobic004G023200 Sobic004G023200 Sobic002G033800--Sobic004G023200 Sobic007G071500 Sobic007G071500 Sobic002G033800--Sobic007G071500 Sobic002G152700 Sobic002G152700 Sobic002G033800--Sobic002G152700 Sobic006G103400 Sobic006G103400 Sobic002G033800--Sobic006G103400 Sobic004G175500 Sobic004G175500 Sobic002G033800--Sobic004G175500 Sobic001G448400 Sobic001G448400 Sobic002G033800--Sobic001G448400 Sobic001G029100 Sobic001G029100 Sobic002G033800--Sobic001G029100 Sobic004G249800 Sobic004G249800 Sobic004G343300--Sobic004G249800 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic004G343300--Sobic001G448400 Sobic004G343300--Sobic007G071500 Sobic010G241000 Sobic010G241000 Sobic004G343300--Sobic010G241000 Sobic006G234100 Sobic006G234100 Sobic004G343300--Sobic006G234100 Sobic004G343300--Sobic004G175500 Sobic004G343300--Sobic002G033800 Sobic003G132100--Sobic004G343300 Sobic008G051000 Sobic008G051000 Sobic003G132100--Sobic008G051000 Sobic003G197400 Sobic003G197400 Sobic003G132100--Sobic003G197400 Sobic006G264201 Sobic006G264201 Sobic003G132100--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic003G132100--Sobic004G238500 Sobic003G433900 Sobic003G433900 Sobic003G132100--Sobic003G433900 Sobic003G132100--Sobic004G249800 Sobic003G132100--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic003G132100--Sobic009G091800 Sobic004G023200--Sobic002G033800 Sobic004G023200--Sobic004G343300 Sobic004G023200--Sobic006G103400 Sobic004G023200--Sobic001G448400 Sobic004G023200--Sobic004G249800 Sobic004G023200--Sobic006G234100 Sobic010G109500 Sobic010G109500 Sobic004G023200--Sobic010G109500 Sobic004G023200--Sobic003G132100 Sobic004G035500 Sobic004G035500 Sobic004G023200--Sobic004G035500 Sobic009G143100 Sobic009G143100 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic007G071500--Sobic004G343300 Sobic002G316700 Sobic002G316700 Sobic007G071500--Sobic002G316700 Sobic008G134800 Sobic008G134800 Sobic007G071500--Sobic008G134800 Sobic007G071500--Sobic004G035500 Sobic003G052500 Sobic003G052500 Sobic007G071500--Sobic003G052500 Sobic001G177000 Sobic001G177000 Sobic007G071500--Sobic001G177000 Sobic008G021300 Sobic008G021300 Sobic002G152700--Sobic008G021300 Sobic001G527000 Sobic001G527000 Sobic002G152700--Sobic001G527000 Sobic002G152700--Sobic002G033800 Sobic003G303700 Sobic003G303700 Sobic002G152700--Sobic003G303700 Sobic010G005500 Sobic010G005500 Sobic002G152700--Sobic010G005500 Sobic006G272900 Sobic006G272900 Sobic002G152700--Sobic006G272900 Sobic002G152700--Sobic004G343300 Sobic009G030900 Sobic009G030900 Sobic002G152700--Sobic009G030900 Sobic002G152700--Sobic003G132100 Sobic006G103400--Sobic004G343300 Sobic006G103400--Sobic004G023200 Sobic006G103400--Sobic004G175500 Sobic006G103400--Sobic003G197400 Sobic006G103400--Sobic002G033800 Sobic006G103400--Sobic004G249800 Sobic001G041800 Sobic001G041800 Sobic006G103400--Sobic001G041800 Sobic006G103400--Sobic010G241000 Sobic004G235200 Sobic004G235200 Sobic006G103400--Sobic004G235200 Sobic003G387800 Sobic003G387800 Sobic004G175500--Sobic003G387800 Sobic004G175500--Sobic004G343300 Sobic007G004800 Sobic007G004800 Sobic004G175500--Sobic007G004800 Sobic002G198600 Sobic002G198600 Sobic004G175500--Sobic002G198600 Sobic004G175500--Sobic004G249800 Sobic004G175500--Sobic007G071500 Sobic004G175500--Sobic001G029100 Sobic004G175500--Sobic006G103400 Sobic004G175500--Sobic009G030900 Sobic001G448400--Sobic006G234100 Sobic002G339200 Sobic002G339200 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic002G329600 Sobic002G329600 Sobic001G448400--Sobic002G329600 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic007G029300 Sobic007G029300 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G078000 Sobic001G078000 Sobic001G448400--Sobic001G078000 Sobic001G029100--Sobic004G175500 Sobic001G029100--Sobic009G030900 Sobic001G029100--Sobic009G143100 Sobic001G029100--Sobic003G387800 Sobic001G029100--Sobic002G033800 Sobic001G029100--Sobic007G004800 Sobic001G029100--Sobic002G198600 Sobic006G093900 Sobic006G093900 Sobic001G029100--Sobic006G093900 Sobic001G029100--Sobic007G071500
Octagon: transcription factors


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