Gene annotation
Transcriptome id Sobic.007G116950.2,Sobic.007G116950.1
Synonym -
Functional annotation -
UniProt A0A1Z5R9C3 , A0A1Z5RAB0
Pfam PF00160
Panther DB PTHR11071 PTHR11071:SF236
NCBI CDD KOG0881; Cyclophilin type peptidyl-prolyl cis-trans isomerase
KEGG Orthology -
Gene Ontology GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT3G01480 : cyclophilin 38
RAP-DB (Rice) LOC_Os08g29370.1 : peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a006109
Brachypodium KQJ98107
Barley HORVU7Hr1G062930.11 , HORVU7Hr1G062930.10 , HORVU7Hr1G062930.9 , HORVU7Hr1G062930.8 , HORVU7Hr1G062930.1 , HORVU7Hr1G062930.3 , HORVU7Hr1G062930.2 , HORVU7Hr1G062930.5 , HORVU7Hr1G062930.4 , HORVU7Hr1G062930.7 , HORVU7Hr1G062930.6
Wheat TraesCS7B02G199200 , TraesCS7B02G199200 , TraesCS7B02G199200 , TraesCS7D02G283600 , TraesCS7D02G283600 , TraesCS7D02G283600 , TraesCS7A02G286700 , TraesCS7A02G286700 , TraesCS7A02G286700 , TraesCS7A02G286700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
2 Sobic.009G091850 - -
3 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
4 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
5 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
6 Sobic.003G099400 cyclophilin-type(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
7 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
8 Sobic.004G114800 expressed protein -
9 Sobic.001G382100 Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed K08902: photosystem II Psb27 protein
10 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
11 Sobic.002G297300 expressed protein -
12 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
13 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
14 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
15 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
16 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
17 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
18 Sobic.001G527000 PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
19 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
20 Sobic.006G100900 cytokinin-O-glucosyltransferase 2, putative, expressed -


Gene co-expression network
sample Sobic007G116950 Sobic007G116950 Sobic008G051000 Sobic008G051000 Sobic007G116950--Sobic008G051000 Sobic009G091850 Sobic009G091850 Sobic007G116950--Sobic009G091850 Sobic001G203000 Sobic001G203000 Sobic007G116950--Sobic001G203000 Sobic006G264201 Sobic006G264201 Sobic007G116950--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic007G116950--Sobic004G238500 Sobic003G099400 Sobic003G099400 Sobic007G116950--Sobic003G099400 Sobic009G091800 Sobic009G091800 Sobic007G116950--Sobic009G091800 Sobic004G114800 Sobic004G114800 Sobic007G116950--Sobic004G114800 Sobic001G382100 Sobic001G382100 Sobic007G116950--Sobic001G382100 Sobic008G051000--Sobic009G091800 Sobic008G051000--Sobic004G238500 Sobic008G051000--Sobic007G116950 Sobic008G051000--Sobic001G203000 Sobic003G132100 Sobic003G132100 Sobic008G051000--Sobic003G132100 Sobic008G051000--Sobic006G264201 Sobic008G051000--Sobic009G091850 Sobic004G234200 Sobic004G234200 Sobic008G051000--Sobic004G234200 Sobic002G297300 Sobic002G297300 Sobic008G051000--Sobic002G297300 Sobic009G091850--Sobic007G116950 Sobic001G527000 Sobic001G527000 Sobic009G091850--Sobic001G527000 Sobic009G091850--Sobic008G051000 Sobic010G255600 Sobic010G255600 Sobic009G091850--Sobic010G255600 Sobic009G091850--Sobic003G132100 Sobic003G433900 Sobic003G433900 Sobic009G091850--Sobic003G433900 Sobic009G091850--Sobic001G382100 Sobic007G004600 Sobic007G004600 Sobic009G091850--Sobic007G004600 Sobic009G091850--Sobic009G091800 Sobic001G203000--Sobic008G051000 Sobic001G203000--Sobic004G114800 Sobic001G203000--Sobic007G116950 Sobic004G054500 Sobic004G054500 Sobic001G203000--Sobic004G054500 Sobic001G203000--Sobic010G255600 Sobic001G203000--Sobic004G234200 Sobic001G203000--Sobic001G382100 Sobic001G203000--Sobic009G091800 Sobic001G203000--Sobic004G238500 Sobic002G329600 Sobic002G329600 Sobic006G264201--Sobic002G329600 Sobic002G339200 Sobic002G339200 Sobic006G264201--Sobic002G339200 Sobic006G264201--Sobic004G238500 Sobic009G234600 Sobic009G234600 Sobic006G264201--Sobic009G234600 Sobic007G029300 Sobic007G029300 Sobic006G264201--Sobic007G029300 Sobic010G241000 Sobic010G241000 Sobic006G264201--Sobic010G241000 Sobic001G078000 Sobic001G078000 Sobic006G264201--Sobic001G078000 Sobic001G448400 Sobic001G448400 Sobic006G264201--Sobic001G448400 Sobic006G264201--Sobic009G091800 Sobic004G238500--Sobic006G264201 Sobic004G238500--Sobic008G051000 Sobic004G238500--Sobic002G297300 Sobic004G238500--Sobic002G329600 Sobic004G238500--Sobic009G091800 Sobic004G238500--Sobic007G116950 Sobic004G238500--Sobic003G132100 Sobic004G238500--Sobic001G382100 Sobic004G238500--Sobic007G029300 Sobic003G099400--Sobic001G382100 Sobic003G099400--Sobic007G116950 Sobic003G099400--Sobic004G238500 Sobic003G099400--Sobic008G051000 Sobic003G099400--Sobic007G029300 Sobic003G099400--Sobic010G255600 Sobic003G099400--Sobic009G091850 Sobic003G099400--Sobic006G264201 Sobic003G099400--Sobic001G203000 Sobic009G091800--Sobic008G051000 Sobic002G288300 Sobic002G288300 Sobic009G091800--Sobic002G288300 Sobic009G091800--Sobic004G234200 Sobic009G091800--Sobic002G297300 Sobic010G022100 Sobic010G022100 Sobic009G091800--Sobic010G022100 Sobic009G091800--Sobic006G264201 Sobic009G091800--Sobic004G238500 Sobic010G000500 Sobic010G000500 Sobic009G091800--Sobic010G000500 Sobic009G091800--Sobic007G116950 Sobic004G114800--Sobic001G203000 Sobic004G114800--Sobic004G234200 Sobic006G100900 Sobic006G100900 Sobic004G114800--Sobic006G100900 Sobic004G114800--Sobic008G051000 Sobic004G114800--Sobic009G091800 Sobic004G114800--Sobic007G116950 Sobic004G114800--Sobic001G382100 Sobic002G328900 Sobic002G328900 Sobic004G114800--Sobic002G328900 Sobic004G114800--Sobic004G238500 Sobic001G382100--Sobic010G255600 Sobic001G382100--Sobic003G099400 Sobic001G382100--Sobic004G238500 Sobic001G382100--Sobic008G051000 Sobic001G382100--Sobic001G203000 Sobic001G382100--Sobic009G091850 Sobic001G382100--Sobic007G116950 Sobic001G382100--Sobic004G114800 Sobic001G382100--Sobic006G100900
Octagon: transcription factors


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