Gene annotation
Transcriptome id Sobic.002G329600.1
Synonym PSBQA, PSBQ-1,PSBQA, Sb02g035610, PSBQ
Functional annotation Oxygen-evolving enhancer protein 3-1 (PubMedID : 26186930)
Ferredoxin-NADP reductase-binding protein (Zm) (PubMedID : 27208977)
- (PubMedID : 29017446)
oxygen evolving enhancer protein 3 domain containing protein, expressed
UniProt C5XAT4
Pfam PF05757
Panther DB PTHR33399 PTHR33399:SF3
NCBI CDD -
KEGG Orthology K08901; photosystem II oxygen-evolving enhancer protein 3
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT4G05180 : photosystem II subunit Q-2
RAP-DB (Rice) LOC_Os07g36080.1 : oxygen evolving enhancer protein 3 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048310 , Zm00025a014853
Brachypodium PNT74969 , PNT74970
Barley HORVU0Hr1G003270.1 , HORVU0Hr1G003270.2 , HORVU0Hr1G003270.3 , HORVU2Hr1G043960.1
Wheat TraesCS2A02G215000 , TraesCS2B02G240000 , TraesCS2D02G220800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G329600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
2 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
3 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
4 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
5 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
6 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
7 Sobic.002G297300 expressed protein -
8 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
9 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
10 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
11 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
12 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
13 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
14 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
15 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
16 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
17 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
18 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
19 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
20 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V


Gene co-expression network
sample Sobic002G329600 Sobic002G329600 Sobic006G264201 Sobic006G264201 Sobic002G329600--Sobic006G264201 Sobic002G339200 Sobic002G339200 Sobic002G329600--Sobic002G339200 Sobic001G078000 Sobic001G078000 Sobic002G329600--Sobic001G078000 Sobic010G241000 Sobic010G241000 Sobic002G329600--Sobic010G241000 Sobic009G234600 Sobic009G234600 Sobic002G329600--Sobic009G234600 Sobic007G029300 Sobic007G029300 Sobic002G329600--Sobic007G029300 Sobic002G297300 Sobic002G297300 Sobic002G329600--Sobic002G297300 Sobic002G030200 Sobic002G030200 Sobic002G329600--Sobic002G030200 Sobic001G448400 Sobic001G448400 Sobic002G329600--Sobic001G448400 Sobic006G264201--Sobic002G329600 Sobic006G264201--Sobic002G339200 Sobic004G238500 Sobic004G238500 Sobic006G264201--Sobic004G238500 Sobic006G264201--Sobic009G234600 Sobic006G264201--Sobic007G029300 Sobic006G264201--Sobic010G241000 Sobic006G264201--Sobic001G078000 Sobic006G264201--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic006G264201--Sobic009G091800 Sobic002G339200--Sobic002G329600 Sobic002G339200--Sobic006G264201 Sobic002G339200--Sobic001G078000 Sobic006G234100 Sobic006G234100 Sobic002G339200--Sobic006G234100 Sobic002G339200--Sobic009G234600 Sobic002G339200--Sobic010G241000 Sobic002G339200--Sobic001G448400 Sobic010G109500 Sobic010G109500 Sobic002G339200--Sobic010G109500 Sobic002G339200--Sobic007G029300 Sobic001G078000--Sobic002G329600 Sobic006G105900 Sobic006G105900 Sobic001G078000--Sobic006G105900 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic001G078000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic001G078000--Sobic005G042000 Sobic001G078000--Sobic006G264201 Sobic006G264900 Sobic006G264900 Sobic001G078000--Sobic006G264900 Sobic001G078000--Sobic007G029300 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic010G241000--Sobic001G177000 Sobic003G052500 Sobic003G052500 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic010G241000--Sobic002G030200 Sobic009G234600--Sobic010G241000 Sobic009G234600--Sobic006G264900 Sobic009G234600--Sobic002G329600 Sobic009G234600--Sobic001G177000 Sobic009G234600--Sobic002G339200 Sobic009G234600--Sobic006G264201 Sobic010G000500 Sobic010G000500 Sobic009G234600--Sobic010G000500 Sobic009G234600--Sobic001G046900 Sobic009G234600--Sobic001G078000 Sobic007G029300--Sobic002G329600 Sobic007G029300--Sobic006G264201 Sobic007G029300--Sobic002G339200 Sobic007G029300--Sobic001G448400 Sobic007G029300--Sobic001G078000 Sobic007G029300--Sobic004G238500 Sobic007G029300--Sobic006G234100 Sobic007G029300--Sobic010G241000 Sobic003G099400 Sobic003G099400 Sobic007G029300--Sobic003G099400 Sobic002G297300--Sobic009G091800 Sobic002G297300--Sobic002G329600 Sobic004G234200 Sobic004G234200 Sobic002G297300--Sobic004G234200 Sobic009G130700 Sobic009G130700 Sobic002G297300--Sobic009G130700 Sobic002G297300--Sobic002G030200 Sobic002G297300--Sobic006G264201 Sobic002G297300--Sobic004G238500 Sobic002G297300--Sobic010G000500 Sobic008G051000 Sobic008G051000 Sobic002G297300--Sobic008G051000 Sobic002G030200--Sobic010G000500 Sobic002G030200--Sobic001G177000 Sobic002G338000 Sobic002G338000 Sobic002G030200--Sobic002G338000 Sobic002G242000 Sobic002G242000 Sobic002G030200--Sobic002G242000 Sobic002G030200--Sobic010G241000 Sobic003G055300 Sobic003G055300 Sobic002G030200--Sobic003G055300 Sobic008G063500 Sobic008G063500 Sobic002G030200--Sobic008G063500 Sobic002G030200--Sobic001G046900 Sobic002G030200--Sobic002G329600 Sobic001G448400--Sobic006G234100 Sobic001G448400--Sobic002G339200 Sobic004G343300 Sobic004G343300 Sobic001G448400--Sobic004G343300 Sobic001G448400--Sobic002G329600 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G448400--Sobic001G078000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.