Gene annotation
| Transcriptome id | Sobic.001G041800.1 |
|---|---|
| Synonym | PDE166, ALB-1V, ALB1, V157, Sb01g003860, CHLD |
| Functional annotation | - (PubMedID : 29017446) magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed |
| UniProt | C5WW04 |
| Pfam | PF01078 PF13519 |
| Panther DB | PTHR10338 PTHR10338:SF126 |
| NCBI CDD | - |
| KEGG Orthology | K03404; chlD, magnesium chelatase subunit D |
| Gene Ontology | GO:0016851; magnesium chelatase activity GO:0015995chlorophyll biosynthetic process GO:0015979photosynthesis |
Orthologs (automatic annotation)
| TAIR | AT1G08520 : ALBINA 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g59640.1 : magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a016477 |
| Brachypodium | KQK12532 |
| Barley | - |
| Wheat | TraesCS5A02G466100 , TraesCS5A02G466100 , TraesCS5B02G477800 , TraesCS5D02G478900 , TraesCS5B02G477800 |
| Populus | - |
JBrowse
| Sobic.001G041800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G197400 | Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed | K06444: lcyE, lycopene epsilon-cyclase |
| 2 | Sobic.004G175500 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 3 | Sobic.006G222700 | OsCHL Chloroplastic lipocalin, expressed | - |
| 4 | Sobic.003G132100 | magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed | K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase |
| 5 | Sobic.006G103400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 6 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 7 | Sobic.002G198600 | -(PubMedID : 29017446)@expressed protein | - |
| 8 | Sobic.001G415400 | PsbP, putative, expressed | - |
| 9 | Sobic.004G068300 | inorganic H+ pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 10 | Sobic.004G249800 | expressed protein | - |
| 11 | Sobic.002G030200 | Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed | K02717: photosystem II oxygen-evolving enhancer protein 2 |
| 12 | Sobic.002G033800 | expressed protein | - |
| 13 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 14 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 15 | Sobic.003G433900 | expressed protein | - |
| 16 | Sobic.001G379700 | uroporphyrinogen decarboxylase, putative, expressed | K01599: hemE, uroporphyrinogen decarboxylase |
| 17 | Sobic.002G297300 | expressed protein | - |
| 18 | Sobic.004G023200 | Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed | - |
| 19 | Sobic.001G536800 | peptidyl-prolyl cis-trans isomerase, putative, expressed | K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B) |
| 20 | Sobic.010G241000 | oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed | K02716: photosystem II oxygen-evolving enhancer protein 1 |
Gene co-expression network
Octagon: transcription factors
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