Gene annotation
Transcriptome id Sobic.001G415400.2,Sobic.001G415400.3,Sobic.001G415400.1
Synonym Sb01g039120, PPL2
Functional annotation PsbP, putative, expressed
UniProt A0A1B6QP22 , A0A1Z5SA47 , A0A1B6QP29
Pfam PF01789
Panther DB PTHR31407 PTHR31407:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT2G39470 : PsbP-like protein 2
RAP-DB (Rice) LOC_Os03g17174.1 : PsbP, putative, expressed
MaizeGDB (Corn) Zm00025a001890
Brachypodium -
Barley -
Wheat TraesCS4D02G204000
Populus -


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cDNA sequences
Sobic.001G415400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G143700 immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
2 Sobic.010G277600 - -
3 Sobic.001G527000 PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
4 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
5 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
6 Sobic.007G004600 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
7 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D
8 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
9 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
10 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
11 Sobic.009G091850 - -
12 Sobic.004G024600 expressed protein -
13 Sobic.002G152700 rhodanese-like, putative, expressed -
14 Sobic.003G433900 expressed protein -
15 Sobic.009G183700 XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
16 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
17 Sobic.003G197400 Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed K06444: lcyE, lycopene epsilon-cyclase
18 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
19 Sobic.010G005500 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
20 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin


Gene co-expression network
sample Sobic001G415400 Sobic001G415400 Sobic007G143700 Sobic007G143700 Sobic001G415400--Sobic007G143700 Sobic010G277600 Sobic010G277600 Sobic001G415400--Sobic010G277600 Sobic001G527000 Sobic001G527000 Sobic001G415400--Sobic001G527000 Sobic009G030900 Sobic009G030900 Sobic001G415400--Sobic009G030900 Sobic002G198600 Sobic002G198600 Sobic001G415400--Sobic002G198600 Sobic007G004600 Sobic007G004600 Sobic001G415400--Sobic007G004600 Sobic001G041800 Sobic001G041800 Sobic001G415400--Sobic001G041800 Sobic004G175500 Sobic004G175500 Sobic001G415400--Sobic004G175500 Sobic003G132100 Sobic003G132100 Sobic001G415400--Sobic003G132100 Sobic004G335800 Sobic004G335800 Sobic007G143700--Sobic004G335800 Sobic004G311100 Sobic004G311100 Sobic007G143700--Sobic004G311100 Sobic004G054500 Sobic004G054500 Sobic007G143700--Sobic004G054500 Sobic007G143700--Sobic001G415400 Sobic003G386300 Sobic003G386300 Sobic007G143700--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic007G143700--Sobic001G122400 Sobic004G116100 Sobic004G116100 Sobic007G143700--Sobic004G116100 Sobic003G157400 Sobic003G157400 Sobic007G143700--Sobic003G157400 Sobic008G112300 Sobic008G112300 Sobic007G143700--Sobic008G112300 Sobic009G183700 Sobic009G183700 Sobic010G277600--Sobic009G183700 Sobic010G277600--Sobic009G030900 Sobic010G005500 Sobic010G005500 Sobic010G277600--Sobic010G005500 Sobic007G052400 Sobic007G052400 Sobic010G277600--Sobic007G052400 Sobic004G239100 Sobic004G239100 Sobic010G277600--Sobic004G239100 Sobic004G012900 Sobic004G012900 Sobic010G277600--Sobic004G012900 Sobic002G277100 Sobic002G277100 Sobic010G277600--Sobic002G277100 Sobic010G277600--Sobic007G004600 Sobic007G173800 Sobic007G173800 Sobic010G277600--Sobic007G173800 Sobic009G091850 Sobic009G091850 Sobic001G527000--Sobic009G091850 Sobic001G527000--Sobic007G004600 Sobic002G152700 Sobic002G152700 Sobic001G527000--Sobic002G152700 Sobic001G527000--Sobic001G415400 Sobic005G123200 Sobic005G123200 Sobic001G527000--Sobic005G123200 Sobic001G527000--Sobic010G277600 Sobic001G527000--Sobic009G183700 Sobic001G527000--Sobic009G030900 Sobic001G527000--Sobic007G143700 Sobic009G030900--Sobic010G005500 Sobic009G030900--Sobic010G277600 Sobic009G030900--Sobic007G052400 Sobic009G030900--Sobic009G183700 Sobic003G387800 Sobic003G387800 Sobic009G030900--Sobic003G387800 Sobic009G059300 Sobic009G059300 Sobic009G030900--Sobic009G059300 Sobic003G002300 Sobic003G002300 Sobic009G030900--Sobic003G002300 Sobic008G171300 Sobic008G171300 Sobic009G030900--Sobic008G171300 Sobic009G030900--Sobic004G175500 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic002G198600--Sobic004G175500 Sobic009G091800 Sobic009G091800 Sobic002G198600--Sobic009G091800 Sobic002G198600--Sobic003G132100 Sobic002G198600--Sobic003G386300 Sobic002G198600--Sobic009G030900 Sobic006G248200 Sobic006G248200 Sobic002G198600--Sobic006G248200 Sobic010G011800 Sobic010G011800 Sobic002G198600--Sobic010G011800 Sobic002G198600--Sobic004G311100 Sobic007G004600--Sobic009G183700 Sobic007G004600--Sobic010G277600 Sobic007G004600--Sobic001G527000 Sobic007G004600--Sobic009G091850 Sobic007G004600--Sobic009G030900 Sobic007G004600--Sobic004G311100 Sobic004G251500 Sobic004G251500 Sobic007G004600--Sobic004G251500 Sobic007G004600--Sobic003G433900 Sobic007G004600--Sobic003G387800 Sobic003G197400 Sobic003G197400 Sobic001G041800--Sobic003G197400 Sobic001G041800--Sobic004G175500 Sobic006G222700 Sobic006G222700 Sobic001G041800--Sobic006G222700 Sobic001G041800--Sobic003G132100 Sobic006G103400 Sobic006G103400 Sobic001G041800--Sobic006G103400 Sobic004G343300 Sobic004G343300 Sobic001G041800--Sobic004G343300 Sobic001G041800--Sobic002G198600 Sobic001G041800--Sobic001G415400 Sobic004G068300 Sobic004G068300 Sobic001G041800--Sobic004G068300 Sobic004G175500--Sobic003G387800 Sobic004G175500--Sobic004G343300 Sobic007G004800 Sobic007G004800 Sobic004G175500--Sobic007G004800 Sobic004G175500--Sobic002G198600 Sobic004G249800 Sobic004G249800 Sobic004G175500--Sobic004G249800 Sobic007G071500 Sobic007G071500 Sobic004G175500--Sobic007G071500 Sobic001G029100 Sobic001G029100 Sobic004G175500--Sobic001G029100 Sobic004G175500--Sobic006G103400 Sobic004G175500--Sobic009G030900 Sobic003G132100--Sobic004G343300 Sobic008G051000 Sobic008G051000 Sobic003G132100--Sobic008G051000 Sobic003G132100--Sobic003G197400 Sobic006G264201 Sobic006G264201 Sobic003G132100--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic003G132100--Sobic004G238500 Sobic003G132100--Sobic003G433900 Sobic003G132100--Sobic004G249800 Sobic001G448400 Sobic001G448400 Sobic003G132100--Sobic001G448400 Sobic003G132100--Sobic009G091800
Octagon: transcription factors


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