Gene annotation
Transcriptome id Sobic.007G207800.1,Sobic.007G207800.3,Sobic.007G207800.2
Synonym Sb07g027500
Functional annotation thylakoid lumen protein, chloroplast precursor, putative, expressed
UniProt C5YIP5 , A0A1Z5RAX8 , A0A1Z5RBE9
Pfam PF01789
Panther DB PTHR31407 PTHR31407:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT1G76450 : Photosystem II reaction center PsbP family protein
RAP-DB (Rice) LOC_Os08g40160.1 : thylakoid lumen protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a016069 , Zm00025a005126
Brachypodium PNT68402 , PNT68403
Barley HORVU7Hr1G051160.14 , HORVU7Hr1G051160.15 , HORVU7Hr1G051160.12 , HORVU7Hr1G051160.13 , HORVU7Hr1G051160.10 , HORVU7Hr1G051160.11 , HORVU7Hr1G051160.4 , HORVU7Hr1G051160.5 , HORVU7Hr1G051160.6 , HORVU7Hr1G051160.7 , HORVU7Hr1G051160.1 , HORVU7Hr1G051160.3 , HORVU7Hr1G051160.8 , HORVU7Hr1G051160.9
Wheat TraesCS7B02G142700 , TraesCS7A02G248600 , TraesCS7D02G247600
Populus -


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cDNA sequences
Sobic.007G207800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G134800 shikimate kinase, putative, expressed -
2 Sobic.007G223500 expressed protein -
3 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
4 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
5 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
6 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
7 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
8 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
9 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
10 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
11 Sobic.003G435800 Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyllide a oxygenase, chloroplast precursor, putative, expressed K13600: chlorophyllide a oxygenase
12 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
13 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
14 Sobic.001G098800 ATP synthase F1, delta subunit family protein, putative, expressed -
15 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
16 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
17 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
19 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
20 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin


Gene co-expression network
sample Sobic007G207800 Sobic007G207800 Sobic008G134800 Sobic008G134800 Sobic007G207800--Sobic008G134800 Sobic007G223500 Sobic007G223500 Sobic007G207800--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic007G207800--Sobic002G030500 Sobic008G066100 Sobic008G066100 Sobic007G207800--Sobic008G066100 Sobic001G425400 Sobic001G425400 Sobic007G207800--Sobic001G425400 Sobic003G359100 Sobic003G359100 Sobic007G207800--Sobic003G359100 Sobic001G519800 Sobic001G519800 Sobic007G207800--Sobic001G519800 Sobic002G316700 Sobic002G316700 Sobic007G207800--Sobic002G316700 Sobic007G071500 Sobic007G071500 Sobic007G207800--Sobic007G071500 Sobic008G134800--Sobic003G359100 Sobic008G134800--Sobic007G207800 Sobic008G134800--Sobic007G071500 Sobic008G134800--Sobic007G223500 Sobic008G134800--Sobic001G425400 Sobic004G035500 Sobic004G035500 Sobic008G134800--Sobic004G035500 Sobic008G134800--Sobic008G066100 Sobic009G143100 Sobic009G143100 Sobic008G134800--Sobic009G143100 Sobic004G249800 Sobic004G249800 Sobic008G134800--Sobic004G249800 Sobic007G223500--Sobic002G316700 Sobic007G223500--Sobic007G207800 Sobic004G227200 Sobic004G227200 Sobic007G223500--Sobic004G227200 Sobic007G223500--Sobic008G134800 Sobic007G223500--Sobic009G143100 Sobic007G223500--Sobic001G425400 Sobic007G223500--Sobic007G071500 Sobic003G387800 Sobic003G387800 Sobic007G223500--Sobic003G387800 Sobic007G223500--Sobic008G066100 Sobic002G030500--Sobic007G207800 Sobic002G030500--Sobic008G066100 Sobic002G030500--Sobic007G223500 Sobic002G030500--Sobic002G316700 Sobic002G030500--Sobic007G071500 Sobic002G030500--Sobic003G359100 Sobic002G030500--Sobic008G134800 Sobic006G093900 Sobic006G093900 Sobic002G030500--Sobic006G093900 Sobic003G435800 Sobic003G435800 Sobic002G030500--Sobic003G435800 Sobic008G066100--Sobic001G425400 Sobic008G066100--Sobic003G359100 Sobic004G308700 Sobic004G308700 Sobic008G066100--Sobic004G308700 Sobic008G066100--Sobic007G207800 Sobic008G066100--Sobic008G134800 Sobic004G272100 Sobic004G272100 Sobic008G066100--Sobic004G272100 Sobic008G066100--Sobic004G035500 Sobic008G066100--Sobic007G223500 Sobic008G066100--Sobic002G030500 Sobic001G425400--Sobic008G066100 Sobic001G425400--Sobic003G359100 Sobic001G425400--Sobic008G134800 Sobic001G425400--Sobic007G207800 Sobic001G425400--Sobic004G308700 Sobic001G425400--Sobic007G223500 Sobic001G425400--Sobic004G272100 Sobic001G425400--Sobic004G035500 Sobic001G098800 Sobic001G098800 Sobic001G425400--Sobic001G098800 Sobic003G359100--Sobic004G035500 Sobic003G359100--Sobic008G134800 Sobic003G359100--Sobic008G066100 Sobic003G359100--Sobic001G425400 Sobic003G359100--Sobic007G207800 Sobic003G359100--Sobic004G249800 Sobic003G359100--Sobic007G071500 Sobic003G359100--Sobic004G272100 Sobic006G105900 Sobic006G105900 Sobic003G359100--Sobic006G105900 Sobic001G519800--Sobic004G272100 Sobic001G102800 Sobic001G102800 Sobic001G519800--Sobic001G102800 Sobic003G002300 Sobic003G002300 Sobic001G519800--Sobic003G002300 Sobic002G051100 Sobic002G051100 Sobic001G519800--Sobic002G051100 Sobic003G431700 Sobic003G431700 Sobic001G519800--Sobic003G431700 Sobic010G201700 Sobic010G201700 Sobic001G519800--Sobic010G201700 Sobic001G519800--Sobic004G308700 Sobic007G004800 Sobic007G004800 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200 Sobic002G316700--Sobic007G223500 Sobic002G316700--Sobic009G143100 Sobic002G316700--Sobic007G071500 Sobic003G209900 Sobic003G209900 Sobic002G316700--Sobic003G209900 Sobic002G316700--Sobic007G207800 Sobic008G063500 Sobic008G063500 Sobic002G316700--Sobic008G063500 Sobic002G316700--Sobic008G134800 Sobic001G177000 Sobic001G177000 Sobic002G316700--Sobic001G177000 Sobic004G056900 Sobic004G056900 Sobic002G316700--Sobic004G056900 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic004G343300 Sobic004G343300 Sobic007G071500--Sobic004G343300 Sobic007G071500--Sobic002G316700 Sobic007G071500--Sobic008G134800 Sobic007G071500--Sobic004G035500 Sobic003G052500 Sobic003G052500 Sobic007G071500--Sobic003G052500 Sobic007G071500--Sobic001G177000
Octagon: transcription factors


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