Gene annotation
| Transcriptome id | Sobic.001G098800.1 |
|---|---|
| Synonym | Sb01g008830, ATPD |
| Functional annotation | ATP synthase F1, delta subunit family protein, putative, expressed |
| UniProt | Q9XHF4 , A0A1Z5S525 |
| Pfam | PF00213 |
| Panther DB | PTHR11910 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0015986; ATP synthesis coupled proton transport |
Orthologs (automatic annotation)
| TAIR | AT4G09650 : ATP synthase delta-subunit gene |
|---|---|
| RAP-DB (Rice) | LOC_Os03g52660.1 : ATP synthase F1, delta subunit family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a008048 |
| Brachypodium | KQK13334 |
| Barley | HORVU4Hr1G011090.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.001G098800 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 2 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 3 | Sobic.007G223500 | expressed protein | - |
| 4 | Sobic.001G425400 | high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 5 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 6 | Sobic.004G175500 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 7 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 8 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 9 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
| 10 | Sobic.004G249800 | expressed protein | - |
| 11 | Sobic.004G235200 | ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed | K02113: ATPF1D, F-type H+-transporting ATPase subunit delta |
| 12 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 13 | Sobic.002G030500 | Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed | - |
| 14 | Sobic.002G316700 | ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed | K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma |
| 15 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 16 | Sobic.007G004800 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 17 | Sobic.006G105900 | Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 18 | Sobic.004G227200 | ferredoxin-thioredoxin reductase, variable chain, putative, expressed | - |
| 19 | Sobic.003G435800 | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyllide a oxygenase, chloroplast precursor, putative, expressed | K13600: chlorophyllide a oxygenase |
| 20 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
