Gene annotation
| Transcriptome id | Sobic.003G435800.1 |
|---|---|
| Synonym | Sb03g046660, CH1, ATCAO, CAO |
| Functional annotation | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (PubMedID : 26465154) Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (PubMedID : 26465154) SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) chlorophyllide a oxygenase, chloroplast precursor, putative, expressed |
| UniProt | C5XIM9 |
| Pfam | PF08417 PF00355 |
| Panther DB | PTHR21266 PTHR21266:SF19 |
| NCBI CDD | - |
| KEGG Orthology | K13600; chlorophyllide a oxygenase |
| Gene Ontology | GO:0010277; chlorophyllide a oxygenase [overall] activity GO:0016491oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT1G44446 : Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain |
|---|---|
| RAP-DB (Rice) | LOC_Os10g41780.1 : chlorophyllide a oxygenase, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a052678 , Zm00025a039073 , Zm00025a025898 |
| Brachypodium | KQK11663 , KQK11662 |
| Barley | HORVU0Hr1G007360.6 , HORVU0Hr1G007360.7 , HORVU0Hr1G007360.4 , HORVU0Hr1G007360.5 , HORVU0Hr1G007360.2 , HORVU0Hr1G007360.3 , HORVU0Hr1G007360.1 , HORVU0Hr1G007360.8 , HORVU0Hr1G007360.9 , HORVU0Hr1G007360.10 |
| Wheat | TraesCS3D02G514100 , TraesCS3A02G506200 , TraesCS3B02G574300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 2 | Sobic.003G387800 | unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed | - |
| 3 | Sobic.007G223500 | expressed protein | - |
| 4 | Sobic.002G030500 | Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed | - |
| 5 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
| 6 | Sobic.001G425400 | high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 7 | Sobic.004G175500 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 8 | Sobic.002G316700 | ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed | K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma |
| 9 | Sobic.004G249800 | expressed protein | - |
| 10 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 11 | Sobic.009G143100 | cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed | K02636: cytochrome b6-f complex iron-sulfur subunit |
| 12 | Sobic.006G103400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 14 | Sobic.004G235200 | ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed | K02113: ATPF1D, F-type H+-transporting ATPase subunit delta |
| 15 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 16 | Sobic.001G102800 | expressed protein | - |
| 17 | Sobic.001G098800 | ATP synthase F1, delta subunit family protein, putative, expressed | - |
| 18 | Sobic.006G147300 | -(PubMedID : 26465154)@expressed protein | - |
| 19 | Sobic.009G030800 | expressed protein | - |
| 20 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
Gene co-expression network
Octagon: transcription factors
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