Gene annotation
| Transcriptome id | Sobic.006G147300.1 |
|---|---|
| Synonym | Sb06g022600 |
| Functional annotation | - (PubMedID : 26465154) expressed protein |
| UniProt | A0A1B6PM16 |
| Pfam | PF02517 |
| Panther DB | PTHR36736 PTHR36736:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016020; membrane |
Orthologs (automatic annotation)
| TAIR | AT4G17840 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os03g01014.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a056509 |
| Brachypodium | KQK24199 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.006G147300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 2 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 3 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 4 | Sobic.002G030500 | Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed | - |
| 5 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 6 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 7 | Sobic.003G199800 | expressed protein | - |
| 8 | Sobic.004G272600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed | - |
| 9 | Sobic.003G435800 | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyllide a oxygenase, chloroplast precursor, putative, expressed | K13600: chlorophyllide a oxygenase |
| 10 | Sobic.004G283100 | -(PubMedID : 26465154)@expressed protein | - |
| 11 | Sobic.004G071800 | - | - |
| 12 | Sobic.001G425400 | high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 13 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
| 14 | Sobic.008G053200 | fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 15 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 16 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 17 | Sobic.007G034300 | expressed protein | - |
| 18 | Sobic.002G064000 | expressed protein | - |
| 19 | Sobic.001G098800 | ATP synthase F1, delta subunit family protein, putative, expressed | - |
| 20 | Sobic.005G165500 | OsSub17 - Putative Subtilisin homologue, expressed | - |
Gene co-expression network
Octagon: transcription factors
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