Gene annotation
Transcriptome id Sobic.004G071800.1
Synonym
Functional annotation -
UniProt A0A1Z5RLS8
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
3 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
5 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
6 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
7 Sobic.002G064000 expressed protein -
8 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
9 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
10 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
12 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
13 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
14 Sobic.010G183032 - -
15 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
16 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
17 Sobic.010G109500 expressed protein -
18 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
19 Sobic.010G108401 - -
20 Sobic.004G026700 down-regulated TF in developmental senescence(PubMedID : 27586543)@transcription factor, putative, expressed K09060: plant G-box-binding factor


Gene co-expression network
sample Sobic004G071800 Sobic004G071800 Sobic001G274600 Sobic001G274600 Sobic004G071800--Sobic001G274600 Sobic003G209800 Sobic003G209800 Sobic004G071800--Sobic003G209800 Sobic004G272600 Sobic004G272600 Sobic004G071800--Sobic004G272600 Sobic003G052500 Sobic003G052500 Sobic004G071800--Sobic003G052500 Sobic008G038300 Sobic008G038300 Sobic004G071800--Sobic008G038300 Sobic006G073500 Sobic006G073500 Sobic004G071800--Sobic006G073500 Sobic002G064000 Sobic002G064000 Sobic004G071800--Sobic002G064000 Sobic002G033900 Sobic002G033900 Sobic004G071800--Sobic002G033900 Sobic001G070500 Sobic001G070500 Sobic004G071800--Sobic001G070500 Sobic001G274600--Sobic008G038300 Sobic001G274600--Sobic004G071800 Sobic001G274600--Sobic003G209800 Sobic006G011100 Sobic006G011100 Sobic001G274600--Sobic006G011100 Sobic001G274600--Sobic003G052500 Sobic010G183032 Sobic010G183032 Sobic001G274600--Sobic010G183032 Sobic002G000500 Sobic002G000500 Sobic001G274600--Sobic002G000500 Sobic010G108401 Sobic010G108401 Sobic001G274600--Sobic010G108401 Sobic001G274600--Sobic006G073500 Sobic003G209800--Sobic003G052500 Sobic010G109500 Sobic010G109500 Sobic003G209800--Sobic010G109500 Sobic003G209800--Sobic001G274600 Sobic003G209800--Sobic006G011100 Sobic003G209800--Sobic008G038300 Sobic006G234100 Sobic006G234100 Sobic003G209800--Sobic006G234100 Sobic006G105900 Sobic006G105900 Sobic003G209800--Sobic006G105900 Sobic003G209800--Sobic004G071800 Sobic003G209800--Sobic002G000500 Sobic004G272600--Sobic001G070500 Sobic010G189300 Sobic010G189300 Sobic004G272600--Sobic010G189300 Sobic004G272600--Sobic003G052500 Sobic004G272600--Sobic002G033900 Sobic004G272600--Sobic006G073500 Sobic004G272600--Sobic004G071800 Sobic004G235200 Sobic004G235200 Sobic004G272600--Sobic004G235200 Sobic008G015100 Sobic008G015100 Sobic004G272600--Sobic008G015100 Sobic009G229700 Sobic009G229700 Sobic004G272600--Sobic009G229700 Sobic010G241000 Sobic010G241000 Sobic003G052500--Sobic010G241000 Sobic003G052500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic003G052500--Sobic004G056900 Sobic003G052500--Sobic002G033900 Sobic003G052500--Sobic006G105900 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700 Sobic002G040100 Sobic002G040100 Sobic008G038300--Sobic002G040100 Sobic008G038300--Sobic001G274600 Sobic008G038300--Sobic010G183032 Sobic008G038300--Sobic003G209800 Sobic008G038300--Sobic010G108401 Sobic008G038300--Sobic002G000500 Sobic009G191300 Sobic009G191300 Sobic008G038300--Sobic009G191300 Sobic008G038300--Sobic004G071800 Sobic003G199800 Sobic003G199800 Sobic008G038300--Sobic003G199800 Sobic006G073500--Sobic002G033900 Sobic006G073500--Sobic009G229700 Sobic005G087000 Sobic005G087000 Sobic006G073500--Sobic005G087000 Sobic006G073500--Sobic001G070500 Sobic001G046900 Sobic001G046900 Sobic006G073500--Sobic001G046900 Sobic006G073500--Sobic004G056900 Sobic006G073500--Sobic010G189300 Sobic006G073500--Sobic010G241000 Sobic006G073500--Sobic003G052500 Sobic002G064000--Sobic004G071800 Sobic002G064000--Sobic004G272600 Sobic002G064000--Sobic001G274600 Sobic002G064000--Sobic003G052500 Sobic002G064000--Sobic001G070500 Sobic006G147300 Sobic006G147300 Sobic002G064000--Sobic006G147300 Sobic004G026700 Sobic004G026700 Sobic002G064000--Sobic004G026700 Sobic001G463200 Sobic001G463200 Sobic002G064000--Sobic001G463200 Sobic002G064000--Sobic006G073500 Sobic002G033900--Sobic006G073500 Sobic002G033900--Sobic009G229700 Sobic002G033900--Sobic001G070500 Sobic002G033900--Sobic001G046900 Sobic002G033900--Sobic005G087000 Sobic002G033900--Sobic004G056900 Sobic002G033900--Sobic010G189300 Sobic002G033900--Sobic010G241000 Sobic002G033900--Sobic003G052500 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic001G070500--Sobic002G242000 Sobic001G070500--Sobic001G046900 Sobic007G136900 Sobic007G136900 Sobic001G070500--Sobic007G136900 Sobic001G070500--Sobic003G052500
Octagon: transcription factors


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