Gene annotation
Transcriptome id Sobic.002G064000.1
Synonym Sb02g005350
Functional annotation expressed protein
UniProt A0A1B6Q9J6
Pfam -
Panther DB PTHR33880 PTHR33880:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23760 : -
RAP-DB (Rice) LOC_Os07g09140.1 : expressed protein
MaizeGDB (Corn) Zm00025a045271 , Zm00025a045273
Brachypodium KQK20500
Barley HORVU6Hr1G013620.4 , HORVU6Hr1G013620.1 , HORVU6Hr1G013620.2 , HORVU6Hr1G013620.3
Wheat TraesCS3D02G085000 , TraesCS3B02G099800 , TraesCS6A02G077500 , TraesCS6B02G104300 , TraesCSU02G025800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G071800 - -
2 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
4 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
5 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
6 Sobic.006G147300 -(PubMedID : 26465154)@expressed protein -
7 Sobic.004G026700 down-regulated TF in developmental senescence(PubMedID : 27586543)@transcription factor, putative, expressed K09060: plant G-box-binding factor
8 Sobic.001G463200 BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
9 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
10 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
11 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
12 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
13 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
14 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
15 Sobic.004G125200 - -
16 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
17 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
18 Sobic.005G099700 expressed protein -
19 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
20 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic002G064000 Sobic002G064000 Sobic004G071800 Sobic004G071800 Sobic002G064000--Sobic004G071800 Sobic004G272600 Sobic004G272600 Sobic002G064000--Sobic004G272600 Sobic001G274600 Sobic001G274600 Sobic002G064000--Sobic001G274600 Sobic003G052500 Sobic003G052500 Sobic002G064000--Sobic003G052500 Sobic001G070500 Sobic001G070500 Sobic002G064000--Sobic001G070500 Sobic006G147300 Sobic006G147300 Sobic002G064000--Sobic006G147300 Sobic004G026700 Sobic004G026700 Sobic002G064000--Sobic004G026700 Sobic001G463200 Sobic001G463200 Sobic002G064000--Sobic001G463200 Sobic006G073500 Sobic006G073500 Sobic002G064000--Sobic006G073500 Sobic004G071800--Sobic001G274600 Sobic003G209800 Sobic003G209800 Sobic004G071800--Sobic003G209800 Sobic004G071800--Sobic004G272600 Sobic004G071800--Sobic003G052500 Sobic008G038300 Sobic008G038300 Sobic004G071800--Sobic008G038300 Sobic004G071800--Sobic006G073500 Sobic004G071800--Sobic002G064000 Sobic002G033900 Sobic002G033900 Sobic004G071800--Sobic002G033900 Sobic004G071800--Sobic001G070500 Sobic004G272600--Sobic001G070500 Sobic010G189300 Sobic010G189300 Sobic004G272600--Sobic010G189300 Sobic004G272600--Sobic003G052500 Sobic004G272600--Sobic002G033900 Sobic004G272600--Sobic006G073500 Sobic004G272600--Sobic004G071800 Sobic004G235200 Sobic004G235200 Sobic004G272600--Sobic004G235200 Sobic008G015100 Sobic008G015100 Sobic004G272600--Sobic008G015100 Sobic009G229700 Sobic009G229700 Sobic004G272600--Sobic009G229700 Sobic001G274600--Sobic008G038300 Sobic001G274600--Sobic004G071800 Sobic001G274600--Sobic003G209800 Sobic006G011100 Sobic006G011100 Sobic001G274600--Sobic006G011100 Sobic001G274600--Sobic003G052500 Sobic010G183032 Sobic010G183032 Sobic001G274600--Sobic010G183032 Sobic002G000500 Sobic002G000500 Sobic001G274600--Sobic002G000500 Sobic010G108401 Sobic010G108401 Sobic001G274600--Sobic010G108401 Sobic001G274600--Sobic006G073500 Sobic010G241000 Sobic010G241000 Sobic003G052500--Sobic010G241000 Sobic003G052500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic003G052500--Sobic004G056900 Sobic003G052500--Sobic002G033900 Sobic006G105900 Sobic006G105900 Sobic003G052500--Sobic006G105900 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic001G070500--Sobic002G242000 Sobic001G046900 Sobic001G046900 Sobic001G070500--Sobic001G046900 Sobic007G136900 Sobic007G136900 Sobic001G070500--Sobic007G136900 Sobic001G070500--Sobic003G052500 Sobic007G207800 Sobic007G207800 Sobic006G147300--Sobic007G207800 Sobic008G066100 Sobic008G066100 Sobic006G147300--Sobic008G066100 Sobic003G359100 Sobic003G359100 Sobic006G147300--Sobic003G359100 Sobic002G030500 Sobic002G030500 Sobic006G147300--Sobic002G030500 Sobic004G035500 Sobic004G035500 Sobic006G147300--Sobic004G035500 Sobic002G098800 Sobic002G098800 Sobic006G147300--Sobic002G098800 Sobic003G199800 Sobic003G199800 Sobic006G147300--Sobic003G199800 Sobic006G147300--Sobic004G272600 Sobic003G435800 Sobic003G435800 Sobic006G147300--Sobic003G435800 Sobic004G026700--Sobic002G000500 Sobic004G026700--Sobic001G274600 Sobic001G361700 Sobic001G361700 Sobic004G026700--Sobic001G361700 Sobic002G040100 Sobic002G040100 Sobic004G026700--Sobic002G040100 Sobic004G026700--Sobic006G011100 Sobic004G026700--Sobic003G199800 Sobic004G035601 Sobic004G035601 Sobic004G026700--Sobic004G035601 Sobic004G026700--Sobic003G209800 Sobic004G026700--Sobic001G338700 Sobic001G463200--Sobic004G272600 Sobic008G026800 Sobic008G026800 Sobic001G463200--Sobic008G026800 Sobic001G463200--Sobic004G035601 Sobic001G463200--Sobic002G064000 Sobic001G463200--Sobic006G147300 Sobic006G051300 Sobic006G051300 Sobic001G463200--Sobic006G051300 Sobic005G111200 Sobic005G111200 Sobic001G463200--Sobic005G111200 Sobic001G463200--Sobic008G015100 Sobic008G053200 Sobic008G053200 Sobic001G463200--Sobic008G053200 Sobic006G073500--Sobic002G033900 Sobic006G073500--Sobic009G229700 Sobic005G087000 Sobic005G087000 Sobic006G073500--Sobic005G087000 Sobic006G073500--Sobic001G070500 Sobic006G073500--Sobic001G046900 Sobic006G073500--Sobic004G056900 Sobic006G073500--Sobic010G189300 Sobic006G073500--Sobic010G241000 Sobic006G073500--Sobic003G052500
Octagon: transcription factors


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