Gene annotation
Transcriptome id Sobic.001G463200.1
Synonym Sb01g043470
Functional annotation BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt A0A1B6QPR7
Pfam PF00651 PF03000
Panther DB PTHR32370 PTHR32370:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G67385 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os03g10880.1 : BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a040402 , Zm00025a021325 , Zm00025a001114 , Zm00025a020770
Brachypodium KQK23018
Barley HORVU6Hr1G015480.2 , HORVU6Hr1G015480.3 , HORVU6Hr1G015480.1 , HORVU4Hr1G069480.10 , HORVU4Hr1G069480.8 , HORVU4Hr1G069480.7 , HORVU4Hr1G069480.6 , HORVU4Hr1G069480.5 , HORVU4Hr1G069480.4 , HORVU4Hr1G069480.3 , HORVU4Hr1G069480.2 , HORVU4Hr1G069480.1 , HORVU4Hr1G069480.9
Wheat TraesCS4D02G255500 , TraesCS4A02G049300 , TraesCS4B02G255500 , TraesCS6B02G117400 , TraesCSU02G114000 , TraesCS6A02G085100
Populus -


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cDNA sequences
Sobic.001G463200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.008G026800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
3 Sobic.004G035601 - -
4 Sobic.002G064000 expressed protein -
5 Sobic.006G147300 -(PubMedID : 26465154)@expressed protein -
6 Sobic.006G051300 expressed protein -
7 Sobic.005G111200 PB1 domain containing protein, expressed -
8 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
9 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
10 Sobic.004G026700 down-regulated TF in developmental senescence(PubMedID : 27586543)@transcription factor, putative, expressed K09060: plant G-box-binding factor
11 Sobic.009G085500 hydrolase, alpha/beta fold family protein, putative, expressed -
12 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
13 Sobic.002G036000 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
14 Sobic.001G425400 high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
15 Sobic.009G171300 PX domain containing protein, expressed -
16 Sobic.001G317400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.005G015200 Phototropic-responsive NPH3 family protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
18 Sobic.003G163700 Glutaredoxin family protein (Os)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3
19 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
20 Sobic.004G122200 expressed protein -


Gene co-expression network
sample Sobic001G463200 Sobic001G463200 Sobic004G272600 Sobic004G272600 Sobic001G463200--Sobic004G272600 Sobic008G026800 Sobic008G026800 Sobic001G463200--Sobic008G026800 Sobic004G035601 Sobic004G035601 Sobic001G463200--Sobic004G035601 Sobic002G064000 Sobic002G064000 Sobic001G463200--Sobic002G064000 Sobic006G147300 Sobic006G147300 Sobic001G463200--Sobic006G147300 Sobic006G051300 Sobic006G051300 Sobic001G463200--Sobic006G051300 Sobic005G111200 Sobic005G111200 Sobic001G463200--Sobic005G111200 Sobic008G015100 Sobic008G015100 Sobic001G463200--Sobic008G015100 Sobic008G053200 Sobic008G053200 Sobic001G463200--Sobic008G053200 Sobic001G070500 Sobic001G070500 Sobic004G272600--Sobic001G070500 Sobic010G189300 Sobic010G189300 Sobic004G272600--Sobic010G189300 Sobic003G052500 Sobic003G052500 Sobic004G272600--Sobic003G052500 Sobic002G033900 Sobic002G033900 Sobic004G272600--Sobic002G033900 Sobic006G073500 Sobic006G073500 Sobic004G272600--Sobic006G073500 Sobic004G071800 Sobic004G071800 Sobic004G272600--Sobic004G071800 Sobic004G235200 Sobic004G235200 Sobic004G272600--Sobic004G235200 Sobic004G272600--Sobic008G015100 Sobic009G229700 Sobic009G229700 Sobic004G272600--Sobic009G229700 Sobic008G026800--Sobic001G463200 Sobic008G026800--Sobic006G147300 Sobic001G317400 Sobic001G317400 Sobic008G026800--Sobic001G317400 Sobic002G036000 Sobic002G036000 Sobic008G026800--Sobic002G036000 Sobic008G026800--Sobic008G053200 Sobic003G431900 Sobic003G431900 Sobic008G026800--Sobic003G431900 Sobic007G207800 Sobic007G207800 Sobic008G026800--Sobic007G207800 Sobic003G199800 Sobic003G199800 Sobic008G026800--Sobic003G199800 Sobic008G026800--Sobic004G272600 Sobic004G035601--Sobic006G051300 Sobic004G035601--Sobic003G199800 Sobic008G016250 Sobic008G016250 Sobic004G035601--Sobic008G016250 Sobic004G035700 Sobic004G035700 Sobic004G035601--Sobic004G035700 Sobic004G026700 Sobic004G026700 Sobic004G035601--Sobic004G026700 Sobic002G000500 Sobic002G000500 Sobic004G035601--Sobic002G000500 Sobic010G183100 Sobic010G183100 Sobic004G035601--Sobic010G183100 Sobic002G040100 Sobic002G040100 Sobic004G035601--Sobic002G040100 Sobic008G038300 Sobic008G038300 Sobic004G035601--Sobic008G038300 Sobic002G064000--Sobic004G071800 Sobic002G064000--Sobic004G272600 Sobic001G274600 Sobic001G274600 Sobic002G064000--Sobic001G274600 Sobic002G064000--Sobic003G052500 Sobic002G064000--Sobic001G070500 Sobic002G064000--Sobic006G147300 Sobic002G064000--Sobic004G026700 Sobic002G064000--Sobic001G463200 Sobic002G064000--Sobic006G073500 Sobic006G147300--Sobic007G207800 Sobic008G066100 Sobic008G066100 Sobic006G147300--Sobic008G066100 Sobic003G359100 Sobic003G359100 Sobic006G147300--Sobic003G359100 Sobic002G030500 Sobic002G030500 Sobic006G147300--Sobic002G030500 Sobic004G035500 Sobic004G035500 Sobic006G147300--Sobic004G035500 Sobic002G098800 Sobic002G098800 Sobic006G147300--Sobic002G098800 Sobic006G147300--Sobic003G199800 Sobic006G147300--Sobic004G272600 Sobic003G435800 Sobic003G435800 Sobic006G147300--Sobic003G435800 Sobic006G051300--Sobic004G035601 Sobic008G104601 Sobic008G104601 Sobic006G051300--Sobic008G104601 Sobic001G344600 Sobic001G344600 Sobic006G051300--Sobic001G344600 Sobic006G051300--Sobic010G183100 Sobic006G051300--Sobic001G463200 Sobic006G051300--Sobic003G199800 Sobic001G520800 Sobic001G520800 Sobic006G051300--Sobic001G520800 Sobic006G051300--Sobic004G026700 Sobic003G069000 Sobic003G069000 Sobic006G051300--Sobic003G069000 Sobic003G163700 Sobic003G163700 Sobic005G111200--Sobic003G163700 Sobic005G111200--Sobic008G015100 Sobic005G111200--Sobic001G463200 Sobic005G111200--Sobic004G272600 Sobic010G164200 Sobic010G164200 Sobic005G111200--Sobic010G164200 Sobic009G171300 Sobic009G171300 Sobic005G111200--Sobic009G171300 Sobic005G111200--Sobic008G016250 Sobic001G425400 Sobic001G425400 Sobic005G111200--Sobic001G425400 Sobic005G099700 Sobic005G099700 Sobic005G111200--Sobic005G099700 Sobic008G015100--Sobic010G189300 Sobic008G015100--Sobic004G272600 Sobic008G015100--Sobic001G070500 Sobic001G435500 Sobic001G435500 Sobic008G015100--Sobic001G435500 Sobic007G136900 Sobic007G136900 Sobic008G015100--Sobic007G136900 Sobic008G015100--Sobic005G099700 Sobic007G223500 Sobic007G223500 Sobic008G015100--Sobic007G223500 Sobic008G101400 Sobic008G101400 Sobic008G015100--Sobic008G101400 Sobic008G015100--Sobic005G111200 Sobic008G053200--Sobic003G431900 Sobic001G519800 Sobic001G519800 Sobic008G053200--Sobic001G519800 Sobic003G234200 Sobic003G234200 Sobic008G053200--Sobic003G234200 Sobic008G053200--Sobic002G036000 Sobic004G238600 Sobic004G238600 Sobic008G053200--Sobic004G238600 Sobic004G283100 Sobic004G283100 Sobic008G053200--Sobic004G283100 Sobic004G272100 Sobic004G272100 Sobic008G053200--Sobic004G272100 Sobic004G308700 Sobic004G308700 Sobic008G053200--Sobic004G308700 Sobic005G089600 Sobic005G089600 Sobic008G053200--Sobic005G089600
Octagon: transcription factors


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