Gene annotation
Transcriptome id Sobic.005G015200.4,Sobic.005G015200.5,Sobic.005G015200.1
Synonym RPT2, Sb05g001300
Functional annotation Phototropic-responsive NPH3 family protein (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt A0A1Z5RGL7 , A0A1Z5RG45 , A0A1Z5RGU5
Pfam PF03000
Panther DB PTHR32370 PTHR32370:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009638; phototropism GO:0004871obsolete signal transducer activity


Orthologs (automatic annotation)
TAIR AT2G30520 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os12g02530.1,LOC_Os12g02530.2 : BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a013176 , Zm00025a053790
Brachypodium -
Barley HORVU4Hr1G023260.1 , HORVU4Hr1G023260.3 , HORVU4Hr1G023260.2 , HORVU4Hr1G023260.5 , HORVU4Hr1G023260.4 , HORVU4Hr1G023260.7 , HORVU4Hr1G023260.6
Wheat TraesCS4B02G122300 , TraesCS4A02G192900 , TraesCS4D02G120400
Populus -


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cDNA sequences
Sobic.005G015200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G097800 - -
2 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
4 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
5 Sobic.002G233300 Cupredoxin superfamily protein(PubMedID : 26465154)@plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.005G167500 resistance protein, putative, expressed -
7 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
8 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
9 Sobic.006G135100 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
10 Sobic.005G118300 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
12 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
13 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
14 Sobic.003G058001 - -
15 Sobic.004G210601 - -
16 Sobic.009G202400 expressed protein -
17 Sobic.001G344600 late embryogenesis abundant protein, putative, expressed -
18 Sobic.001G463200 BTBN5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
19 Sobic.005G099700 expressed protein -
20 Sobic.003G209900 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1


Gene co-expression network
sample Sobic005G015200 Sobic005G015200 Sobic003G097800 Sobic003G097800 Sobic005G015200--Sobic003G097800 Sobic004G272600 Sobic004G272600 Sobic005G015200--Sobic004G272600 Sobic001G338700 Sobic001G338700 Sobic005G015200--Sobic001G338700 Sobic009G191300 Sobic009G191300 Sobic005G015200--Sobic009G191300 Sobic002G233300 Sobic002G233300 Sobic005G015200--Sobic002G233300 Sobic005G167500 Sobic005G167500 Sobic005G015200--Sobic005G167500 Sobic001G070500 Sobic001G070500 Sobic005G015200--Sobic001G070500 Sobic003G052500 Sobic003G052500 Sobic005G015200--Sobic003G052500 Sobic006G135100 Sobic006G135100 Sobic005G015200--Sobic006G135100 Sobic003G097800--Sobic005G015200 Sobic005G118300 Sobic005G118300 Sobic003G097800--Sobic005G118300 Sobic005G217900 Sobic005G217900 Sobic003G097800--Sobic005G217900 Sobic004G210601 Sobic004G210601 Sobic003G097800--Sobic004G210601 Sobic005G065500 Sobic005G065500 Sobic003G097800--Sobic005G065500 Sobic003G097800--Sobic005G167500 Sobic003G058001 Sobic003G058001 Sobic003G097800--Sobic003G058001 Sobic009G202400 Sobic009G202400 Sobic003G097800--Sobic009G202400 Sobic003G097800--Sobic001G338700 Sobic004G272600--Sobic001G070500 Sobic010G189300 Sobic010G189300 Sobic004G272600--Sobic010G189300 Sobic004G272600--Sobic003G052500 Sobic002G033900 Sobic002G033900 Sobic004G272600--Sobic002G033900 Sobic006G073500 Sobic006G073500 Sobic004G272600--Sobic006G073500 Sobic004G071800 Sobic004G071800 Sobic004G272600--Sobic004G071800 Sobic004G235200 Sobic004G235200 Sobic004G272600--Sobic004G235200 Sobic008G015100 Sobic008G015100 Sobic004G272600--Sobic008G015100 Sobic009G229700 Sobic009G229700 Sobic004G272600--Sobic009G229700 Sobic001G338700--Sobic003G052500 Sobic006G011100 Sobic006G011100 Sobic001G338700--Sobic006G011100 Sobic010G109500 Sobic010G109500 Sobic001G338700--Sobic010G109500 Sobic006G234100 Sobic006G234100 Sobic001G338700--Sobic006G234100 Sobic004G056900 Sobic004G056900 Sobic001G338700--Sobic004G056900 Sobic007G071500 Sobic007G071500 Sobic001G338700--Sobic007G071500 Sobic001G338700--Sobic001G070500 Sobic003G209800 Sobic003G209800 Sobic001G338700--Sobic003G209800 Sobic004G035500 Sobic004G035500 Sobic001G338700--Sobic004G035500 Sobic008G038300 Sobic008G038300 Sobic009G191300--Sobic008G038300 Sobic009G191300--Sobic003G209800 Sobic002G040100 Sobic002G040100 Sobic009G191300--Sobic002G040100 Sobic009G191300--Sobic003G052500 Sobic009G191300--Sobic004G035500 Sobic003G359100 Sobic003G359100 Sobic009G191300--Sobic003G359100 Sobic003G199800 Sobic003G199800 Sobic009G191300--Sobic003G199800 Sobic009G191300--Sobic010G109500 Sobic009G191300--Sobic001G338700 Sobic010G038500 Sobic010G038500 Sobic002G233300--Sobic010G038500 Sobic002G233300--Sobic003G199800 Sobic002G233300--Sobic002G040100 Sobic001G344600 Sobic001G344600 Sobic002G233300--Sobic001G344600 Sobic002G233300--Sobic009G191300 Sobic007G034300 Sobic007G034300 Sobic002G233300--Sobic007G034300 Sobic002G233300--Sobic001G338700 Sobic001G520800 Sobic001G520800 Sobic002G233300--Sobic001G520800 Sobic002G233300--Sobic008G038300 Sobic008G036300 Sobic008G036300 Sobic005G167500--Sobic008G036300 Sobic005G167500--Sobic003G058001 Sobic004G182700 Sobic004G182700 Sobic005G167500--Sobic004G182700 Sobic005G192600 Sobic005G192600 Sobic005G167500--Sobic005G192600 Sobic008G036350 Sobic008G036350 Sobic005G167500--Sobic008G036350 Sobic005G167500--Sobic004G210601 Sobic001G198800 Sobic001G198800 Sobic005G167500--Sobic001G198800 Sobic005G167500--Sobic005G065500 Sobic005G167500--Sobic009G202400 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic001G070500--Sobic002G242000 Sobic001G046900 Sobic001G046900 Sobic001G070500--Sobic001G046900 Sobic007G136900 Sobic007G136900 Sobic001G070500--Sobic007G136900 Sobic001G070500--Sobic003G052500 Sobic010G241000 Sobic010G241000 Sobic003G052500--Sobic010G241000 Sobic003G052500--Sobic006G073500 Sobic003G052500--Sobic004G056900 Sobic003G052500--Sobic002G033900 Sobic006G105900 Sobic006G105900 Sobic003G052500--Sobic006G105900 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic003G052500--Sobic004G235200 Sobic003G052500--Sobic001G338700 Sobic010G214000 Sobic010G214000 Sobic006G135100--Sobic010G214000 Sobic006G135100--Sobic005G015200 Sobic006G135100--Sobic008G015100 Sobic005G097800 Sobic005G097800 Sobic006G135100--Sobic005G097800 Sobic010G225600 Sobic010G225600 Sobic006G135100--Sobic010G225600 Sobic010G096300 Sobic010G096300 Sobic006G135100--Sobic010G096300 Sobic003G088800 Sobic003G088800 Sobic006G135100--Sobic003G088800 Sobic006G135100--Sobic009G202400 Sobic005G055900 Sobic005G055900 Sobic006G135100--Sobic005G055900
Octagon: transcription factors


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