Gene annotation
Transcriptome id Sobic.002G233300.1
Synonym Sb02g027250
Functional annotation Cupredoxin superfamily protein (PubMedID : 26465154)
plastocyanin-like domain containing protein, putative, expressed
UniProt C5X318
Pfam PF02298
Panther DB PTHR33021 PTHR33021:SF65
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT1G72230 : Cupredoxin superfamily protein
RAP-DB (Rice) LOC_Os09g29390.1 : plastocyanin-like domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020907 , Zm00025a047335
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G038500 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.003G199800 expressed protein -
3 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
4 Sobic.001G344600 late embryogenesis abundant protein, putative, expressed -
5 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
6 Sobic.007G034300 expressed protein -
7 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
8 Sobic.001G520800 expressed protein -
9 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
10 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
11 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
12 Sobic.003G131000 expressed protein -
13 Sobic.005G015200 Phototropic-responsive NPH3 family protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
14 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
15 Sobic.001G068400 - -
16 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
17 Sobic.005G118300 plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
19 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
20 Sobic.009G244300 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic002G233300 Sobic002G233300 Sobic010G038500 Sobic010G038500 Sobic002G233300--Sobic010G038500 Sobic003G199800 Sobic003G199800 Sobic002G233300--Sobic003G199800 Sobic002G040100 Sobic002G040100 Sobic002G233300--Sobic002G040100 Sobic001G344600 Sobic001G344600 Sobic002G233300--Sobic001G344600 Sobic009G191300 Sobic009G191300 Sobic002G233300--Sobic009G191300 Sobic007G034300 Sobic007G034300 Sobic002G233300--Sobic007G034300 Sobic001G338700 Sobic001G338700 Sobic002G233300--Sobic001G338700 Sobic001G520800 Sobic001G520800 Sobic002G233300--Sobic001G520800 Sobic008G038300 Sobic008G038300 Sobic002G233300--Sobic008G038300 Sobic008G081200 Sobic008G081200 Sobic010G038500--Sobic008G081200 Sobic009G254600 Sobic009G254600 Sobic010G038500--Sobic009G254600 Sobic001G068400 Sobic001G068400 Sobic010G038500--Sobic001G068400 Sobic010G038500--Sobic002G040100 Sobic004G035700 Sobic004G035700 Sobic010G038500--Sobic004G035700 Sobic010G183100 Sobic010G183100 Sobic010G038500--Sobic010G183100 Sobic010G038500--Sobic002G233300 Sobic010G038500--Sobic003G199800 Sobic003G131000 Sobic003G131000 Sobic010G038500--Sobic003G131000 Sobic003G199800--Sobic002G040100 Sobic010G276400 Sobic010G276400 Sobic003G199800--Sobic010G276400 Sobic002G000500 Sobic002G000500 Sobic003G199800--Sobic002G000500 Sobic003G199800--Sobic010G183100 Sobic004G035500 Sobic004G035500 Sobic003G199800--Sobic004G035500 Sobic003G199800--Sobic008G038300 Sobic010G109500 Sobic010G109500 Sobic003G199800--Sobic010G109500 Sobic007G189700 Sobic007G189700 Sobic003G199800--Sobic007G189700 Sobic003G199800--Sobic009G191300 Sobic002G040100--Sobic002G000500 Sobic002G040100--Sobic008G038300 Sobic002G040100--Sobic003G199800 Sobic002G040100--Sobic010G276400 Sobic002G040100--Sobic001G068400 Sobic002G040100--Sobic010G109500 Sobic002G040100--Sobic010G038500 Sobic010G183032 Sobic010G183032 Sobic002G040100--Sobic010G183032 Sobic003G209800 Sobic003G209800 Sobic002G040100--Sobic003G209800 Sobic001G344600--Sobic001G338700 Sobic001G344600--Sobic002G040100 Sobic001G344600--Sobic002G233300 Sobic001G344600--Sobic010G038500 Sobic001G344600--Sobic010G183032 Sobic001G344600--Sobic008G038300 Sobic010G108401 Sobic010G108401 Sobic001G344600--Sobic010G108401 Sobic001G344600--Sobic003G199800 Sobic004G026700 Sobic004G026700 Sobic001G344600--Sobic004G026700 Sobic009G191300--Sobic008G038300 Sobic009G191300--Sobic003G209800 Sobic009G191300--Sobic002G040100 Sobic003G052500 Sobic003G052500 Sobic009G191300--Sobic003G052500 Sobic009G191300--Sobic004G035500 Sobic003G359100 Sobic003G359100 Sobic009G191300--Sobic003G359100 Sobic009G191300--Sobic003G199800 Sobic009G191300--Sobic010G109500 Sobic009G191300--Sobic001G338700 Sobic007G034300--Sobic001G520800 Sobic005G165500 Sobic005G165500 Sobic007G034300--Sobic005G165500 Sobic009G244300 Sobic009G244300 Sobic007G034300--Sobic009G244300 Sobic008G053200 Sobic008G053200 Sobic007G034300--Sobic008G053200 Sobic004G283100 Sobic004G283100 Sobic007G034300--Sobic004G283100 Sobic008G104601 Sobic008G104601 Sobic007G034300--Sobic008G104601 Sobic007G034300--Sobic002G233300 Sobic003G231800 Sobic003G231800 Sobic007G034300--Sobic003G231800 Sobic004G305800 Sobic004G305800 Sobic007G034300--Sobic004G305800 Sobic001G338700--Sobic003G052500 Sobic006G011100 Sobic006G011100 Sobic001G338700--Sobic006G011100 Sobic001G338700--Sobic010G109500 Sobic006G234100 Sobic006G234100 Sobic001G338700--Sobic006G234100 Sobic004G056900 Sobic004G056900 Sobic001G338700--Sobic004G056900 Sobic007G071500 Sobic007G071500 Sobic001G338700--Sobic007G071500 Sobic001G070500 Sobic001G070500 Sobic001G338700--Sobic001G070500 Sobic001G338700--Sobic003G209800 Sobic001G338700--Sobic004G035500 Sobic001G520800--Sobic007G034300 Sobic005G039600 Sobic005G039600 Sobic001G520800--Sobic005G039600 Sobic001G520800--Sobic003G199800 Sobic001G520800--Sobic008G104601 Sobic001G520800--Sobic003G231800 Sobic001G520800--Sobic002G233300 Sobic001G520800--Sobic009G244300 Sobic001G520800--Sobic007G189700 Sobic003G431900 Sobic003G431900 Sobic001G520800--Sobic003G431900 Sobic008G038300--Sobic002G040100 Sobic001G274600 Sobic001G274600 Sobic008G038300--Sobic001G274600 Sobic008G038300--Sobic010G183032 Sobic008G038300--Sobic003G209800 Sobic008G038300--Sobic010G108401 Sobic008G038300--Sobic002G000500 Sobic008G038300--Sobic009G191300 Sobic004G071800 Sobic004G071800 Sobic008G038300--Sobic004G071800 Sobic008G038300--Sobic003G199800
Octagon: transcription factors


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