Gene annotation
Transcriptome id Sobic.010G038500.1
Synonym Sb10g003420
Functional annotation GDSL-like lipase/acylhydrolase, putative, expressed
UniProt C5Z4A0
Pfam PF00657
Panther DB PTHR22835 PTHR22835:SF251
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016788; hydrolase activity, acting on ester bonds


Orthologs (automatic annotation)
TAIR AT3G16370 : GDSL-like Lipase/Acylhydrolase superfamily protein
RAP-DB (Rice) LOC_Os06g05630.1 : GDSL-like lipase/acylhydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a038910 , Zm00025a041514
Brachypodium KQK19861 , PNT76634 , PNT76635
Barley HORVU0Hr1G019420.1 , HORVU7Hr1G021620.1 , HORVU7Hr1G021620.2 , HORVU7Hr1G021620.3 , HORVU7Hr1G021620.4 , HORVU7Hr1G021620.5 , HORVU7Hr1G021620.6
Wheat TraesCS7A02G100600 , TraesCS7A02G100600 , TraesCS4A02G399300 , TraesCS3D02G431500 , TraesCS3D02G431500 , TraesCS7D02G094900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G038500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
2 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.001G068400 - -
4 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
5 Sobic.004G035700 - -
6 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
7 Sobic.002G233300 Cupredoxin superfamily protein(PubMedID : 26465154)@plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.003G199800 expressed protein -
9 Sobic.003G131000 expressed protein -
10 Sobic.001G344600 late embryogenesis abundant protein, putative, expressed -
11 Sobic.004G026300 heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
12 Sobic.010G183032 - -
13 Sobic.007G189700 - -
14 Sobic.001G297400 histone H3, putative, expressed K11253: histone H3
15 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
16 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
17 Sobic.010G108401 - -
18 Sobic.005G065500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease 1 precursor, putative, expressed -
19 Sobic.002G000500 isoflavone reductase, putative, expressed -
20 Sobic.001G098600 expressed protein -


Gene co-expression network
sample Sobic010G038500 Sobic010G038500 Sobic008G081200 Sobic008G081200 Sobic010G038500--Sobic008G081200 Sobic009G254600 Sobic009G254600 Sobic010G038500--Sobic009G254600 Sobic001G068400 Sobic001G068400 Sobic010G038500--Sobic001G068400 Sobic002G040100 Sobic002G040100 Sobic010G038500--Sobic002G040100 Sobic004G035700 Sobic004G035700 Sobic010G038500--Sobic004G035700 Sobic010G183100 Sobic010G183100 Sobic010G038500--Sobic010G183100 Sobic002G233300 Sobic002G233300 Sobic010G038500--Sobic002G233300 Sobic003G199800 Sobic003G199800 Sobic010G038500--Sobic003G199800 Sobic003G131000 Sobic003G131000 Sobic010G038500--Sobic003G131000 Sobic008G081200--Sobic010G038500 Sobic008G081200--Sobic010G183100 Sobic008G081200--Sobic009G254600 Sobic008G081200--Sobic001G068400 Sobic008G081200--Sobic002G040100 Sobic008G081200--Sobic004G035700 Sobic008G081200--Sobic003G199800 Sobic007G189700 Sobic007G189700 Sobic008G081200--Sobic007G189700 Sobic010G276400 Sobic010G276400 Sobic008G081200--Sobic010G276400 Sobic009G254600--Sobic010G038500 Sobic009G254600--Sobic008G081200 Sobic001G189100 Sobic001G189100 Sobic009G254600--Sobic001G189100 Sobic009G254600--Sobic004G035700 Sobic003G237600 Sobic003G237600 Sobic009G254600--Sobic003G237600 Sobic009G254600--Sobic010G183100 Sobic009G254600--Sobic001G068400 Sobic009G254600--Sobic007G189700 Sobic001G068400--Sobic002G040100 Sobic001G068400--Sobic010G038500 Sobic001G068400--Sobic010G183100 Sobic001G068400--Sobic004G035700 Sobic001G068400--Sobic008G081200 Sobic001G068400--Sobic010G276400 Sobic002G000500 Sobic002G000500 Sobic001G068400--Sobic002G000500 Sobic001G068400--Sobic003G199800 Sobic010G183032 Sobic010G183032 Sobic001G068400--Sobic010G183032 Sobic002G040100--Sobic002G000500 Sobic008G038300 Sobic008G038300 Sobic002G040100--Sobic008G038300 Sobic002G040100--Sobic003G199800 Sobic002G040100--Sobic010G276400 Sobic002G040100--Sobic001G068400 Sobic010G109500 Sobic010G109500 Sobic002G040100--Sobic010G109500 Sobic002G040100--Sobic010G038500 Sobic002G040100--Sobic010G183032 Sobic003G209800 Sobic003G209800 Sobic002G040100--Sobic003G209800 Sobic004G035700--Sobic010G183100 Sobic004G035700--Sobic007G189700 Sobic004G035700--Sobic001G068400 Sobic004G035700--Sobic010G183032 Sobic010G108401 Sobic010G108401 Sobic004G035700--Sobic010G108401 Sobic004G035700--Sobic009G254600 Sobic004G035700--Sobic010G038500 Sobic004G035700--Sobic002G040100 Sobic001G297400 Sobic001G297400 Sobic004G035700--Sobic001G297400 Sobic010G183100--Sobic004G035700 Sobic010G183100--Sobic007G189700 Sobic010G183100--Sobic008G081200 Sobic010G183100--Sobic001G068400 Sobic010G183100--Sobic003G199800 Sobic010G183100--Sobic010G038500 Sobic010G183100--Sobic002G040100 Sobic010G183100--Sobic009G254600 Sobic009G222200 Sobic009G222200 Sobic010G183100--Sobic009G222200 Sobic002G233300--Sobic010G038500 Sobic002G233300--Sobic003G199800 Sobic002G233300--Sobic002G040100 Sobic001G344600 Sobic001G344600 Sobic002G233300--Sobic001G344600 Sobic009G191300 Sobic009G191300 Sobic002G233300--Sobic009G191300 Sobic007G034300 Sobic007G034300 Sobic002G233300--Sobic007G034300 Sobic001G338700 Sobic001G338700 Sobic002G233300--Sobic001G338700 Sobic001G520800 Sobic001G520800 Sobic002G233300--Sobic001G520800 Sobic002G233300--Sobic008G038300 Sobic003G199800--Sobic002G040100 Sobic003G199800--Sobic010G276400 Sobic003G199800--Sobic002G000500 Sobic003G199800--Sobic010G183100 Sobic004G035500 Sobic004G035500 Sobic003G199800--Sobic004G035500 Sobic003G199800--Sobic008G038300 Sobic003G199800--Sobic010G109500 Sobic003G199800--Sobic007G189700 Sobic003G199800--Sobic009G191300 Sobic004G026300 Sobic004G026300 Sobic003G131000--Sobic004G026300 Sobic001G198800 Sobic001G198800 Sobic003G131000--Sobic001G198800 Sobic003G131000--Sobic010G276400 Sobic003G131000--Sobic010G038500 Sobic003G131000--Sobic002G040100 Sobic003G131000--Sobic010G109500 Sobic003G057900 Sobic003G057900 Sobic003G131000--Sobic003G057900 Sobic003G131000--Sobic003G199800 Sobic003G131000--Sobic001G068400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.