Gene annotation
Transcriptome id Sobic.001G344600.1
Synonym AtLEA5, SAG21, Sb01g033070
Functional annotation late embryogenesis abundant protein, putative, expressed
UniProt C5WXJ2
Pfam PF03242
Panther DB PTHR33509 PTHR33509:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress


Orthologs (automatic annotation)
TAIR AT4G02380 : senescence-associated gene 21
RAP-DB (Rice) LOC_Os03g28260.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
2 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
3 Sobic.002G233300 Cupredoxin superfamily protein(PubMedID : 26465154)@plastocyanin-like domain containing protein, putative, expressed -
4 Sobic.010G038500 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.010G183032 - -
6 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
7 Sobic.010G108401 - -
8 Sobic.003G199800 expressed protein -
9 Sobic.004G026700 down-regulated TF in developmental senescence(PubMedID : 27586543)@transcription factor, putative, expressed K09060: plant G-box-binding factor
10 Sobic.001G068400 - -
11 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.004G071800 - -
13 Sobic.009G191300 photosystem II reaction center W protein, chloroplast precursor, putative, expressed K02721: photosystem II PsbW protein
14 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
15 Sobic.006G051300 expressed protein -
16 Sobic.001G297400 histone H3, putative, expressed K11253: histone H3
17 Sobic.001G098600 expressed protein -
18 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
19 Sobic.004G035700 - -
20 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G344600 Sobic001G344600 Sobic001G338700 Sobic001G338700 Sobic001G344600--Sobic001G338700 Sobic002G040100 Sobic002G040100 Sobic001G344600--Sobic002G040100 Sobic002G233300 Sobic002G233300 Sobic001G344600--Sobic002G233300 Sobic010G038500 Sobic010G038500 Sobic001G344600--Sobic010G038500 Sobic010G183032 Sobic010G183032 Sobic001G344600--Sobic010G183032 Sobic008G038300 Sobic008G038300 Sobic001G344600--Sobic008G038300 Sobic010G108401 Sobic010G108401 Sobic001G344600--Sobic010G108401 Sobic003G199800 Sobic003G199800 Sobic001G344600--Sobic003G199800 Sobic004G026700 Sobic004G026700 Sobic001G344600--Sobic004G026700 Sobic003G052500 Sobic003G052500 Sobic001G338700--Sobic003G052500 Sobic006G011100 Sobic006G011100 Sobic001G338700--Sobic006G011100 Sobic010G109500 Sobic010G109500 Sobic001G338700--Sobic010G109500 Sobic006G234100 Sobic006G234100 Sobic001G338700--Sobic006G234100 Sobic004G056900 Sobic004G056900 Sobic001G338700--Sobic004G056900 Sobic007G071500 Sobic007G071500 Sobic001G338700--Sobic007G071500 Sobic001G070500 Sobic001G070500 Sobic001G338700--Sobic001G070500 Sobic003G209800 Sobic003G209800 Sobic001G338700--Sobic003G209800 Sobic004G035500 Sobic004G035500 Sobic001G338700--Sobic004G035500 Sobic002G000500 Sobic002G000500 Sobic002G040100--Sobic002G000500 Sobic002G040100--Sobic008G038300 Sobic002G040100--Sobic003G199800 Sobic010G276400 Sobic010G276400 Sobic002G040100--Sobic010G276400 Sobic001G068400 Sobic001G068400 Sobic002G040100--Sobic001G068400 Sobic002G040100--Sobic010G109500 Sobic002G040100--Sobic010G038500 Sobic002G040100--Sobic010G183032 Sobic002G040100--Sobic003G209800 Sobic002G233300--Sobic010G038500 Sobic002G233300--Sobic003G199800 Sobic002G233300--Sobic002G040100 Sobic002G233300--Sobic001G344600 Sobic009G191300 Sobic009G191300 Sobic002G233300--Sobic009G191300 Sobic007G034300 Sobic007G034300 Sobic002G233300--Sobic007G034300 Sobic002G233300--Sobic001G338700 Sobic001G520800 Sobic001G520800 Sobic002G233300--Sobic001G520800 Sobic002G233300--Sobic008G038300 Sobic008G081200 Sobic008G081200 Sobic010G038500--Sobic008G081200 Sobic009G254600 Sobic009G254600 Sobic010G038500--Sobic009G254600 Sobic010G038500--Sobic001G068400 Sobic010G038500--Sobic002G040100 Sobic004G035700 Sobic004G035700 Sobic010G038500--Sobic004G035700 Sobic010G183100 Sobic010G183100 Sobic010G038500--Sobic010G183100 Sobic010G038500--Sobic002G233300 Sobic010G038500--Sobic003G199800 Sobic003G131000 Sobic003G131000 Sobic010G038500--Sobic003G131000 Sobic010G183032--Sobic010G108401 Sobic010G183032--Sobic008G038300 Sobic010G183032--Sobic004G035700 Sobic001G274600 Sobic001G274600 Sobic010G183032--Sobic001G274600 Sobic010G183032--Sobic002G040100 Sobic001G297400 Sobic001G297400 Sobic010G183032--Sobic001G297400 Sobic010G183032--Sobic001G068400 Sobic010G183032--Sobic010G183100 Sobic010G183032--Sobic002G000500 Sobic008G038300--Sobic002G040100 Sobic008G038300--Sobic001G274600 Sobic008G038300--Sobic010G183032 Sobic008G038300--Sobic003G209800 Sobic008G038300--Sobic010G108401 Sobic008G038300--Sobic002G000500 Sobic008G038300--Sobic009G191300 Sobic004G071800 Sobic004G071800 Sobic008G038300--Sobic004G071800 Sobic008G038300--Sobic003G199800 Sobic010G108401--Sobic010G183032 Sobic010G108401--Sobic008G038300 Sobic010G108401--Sobic004G035700 Sobic010G108401--Sobic001G274600 Sobic010G108401--Sobic001G297400 Sobic010G108401--Sobic002G040100 Sobic010G108401--Sobic001G068400 Sobic010G108401--Sobic010G183100 Sobic010G108401--Sobic002G000500 Sobic003G199800--Sobic002G040100 Sobic003G199800--Sobic010G276400 Sobic003G199800--Sobic002G000500 Sobic003G199800--Sobic010G183100 Sobic003G199800--Sobic004G035500 Sobic003G199800--Sobic008G038300 Sobic003G199800--Sobic010G109500 Sobic007G189700 Sobic007G189700 Sobic003G199800--Sobic007G189700 Sobic003G199800--Sobic009G191300 Sobic004G026700--Sobic002G000500 Sobic004G026700--Sobic001G274600 Sobic001G361700 Sobic001G361700 Sobic004G026700--Sobic001G361700 Sobic004G026700--Sobic002G040100 Sobic004G026700--Sobic006G011100 Sobic004G026700--Sobic003G199800 Sobic004G035601 Sobic004G035601 Sobic004G026700--Sobic004G035601 Sobic004G026700--Sobic003G209800 Sobic004G026700--Sobic001G338700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.