Gene annotation
Transcriptome id Sobic.009G191300.1
Synonym PSBW
Functional annotation photosystem II reaction center W protein, chloroplast precursor, putative, expressed
UniProt A0A1B6P9E5
Pfam PF07123
Panther DB PTHR34552
NCBI CDD -
KEGG Orthology K02721; photosystem II PsbW protein
Gene Ontology GO:0015979; photosynthesis GO:0009523photosystem II GO:0009507chloroplast


Orthologs (automatic annotation)
TAIR AT2G30570 : photosystem II reaction center W
RAP-DB (Rice) LOC_Os05g43310.1 : photosystem II reaction center W protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a037908
Brachypodium KQK05498 , KQK10003
Barley HORVU1Hr1G078140.5 , HORVU1Hr1G078140.4 , HORVU1Hr1G078140.7 , HORVU1Hr1G078140.6 , HORVU1Hr1G078140.1 , HORVU1Hr1G078140.3 , HORVU1Hr1G078140.2 , HORVU3Hr1G075870.1 , HORVU3Hr1G075870.2 , HORVU3Hr1G075870.3
Wheat TraesCS1B02G339500 , TraesCS3D02G309400 , TraesCS3A02G321900 , TraesCS1B02G343300 , TraesCS1D02G328000 , TraesCS1A02G326400 , TraesCS3B02G344200 , TraesCS1A02G326100
Populus -


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cDNA sequences
Sobic.009G191300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
2 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
3 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
4 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
5 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
6 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase
7 Sobic.003G199800 expressed protein -
8 Sobic.010G109500 expressed protein -
9 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
11 Sobic.002G233300 Cupredoxin superfamily protein(PubMedID : 26465154)@plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
13 Sobic.004G071800 - -
14 Sobic.001G364100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
16 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.006G136500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
18 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
19 Sobic.002G000500 isoflavone reductase, putative, expressed -
20 Sobic.008G134800 shikimate kinase, putative, expressed -


Gene co-expression network
sample Sobic009G191300 Sobic009G191300 Sobic008G038300 Sobic008G038300 Sobic009G191300--Sobic008G038300 Sobic003G209800 Sobic003G209800 Sobic009G191300--Sobic003G209800 Sobic002G040100 Sobic002G040100 Sobic009G191300--Sobic002G040100 Sobic003G052500 Sobic003G052500 Sobic009G191300--Sobic003G052500 Sobic004G035500 Sobic004G035500 Sobic009G191300--Sobic004G035500 Sobic003G359100 Sobic003G359100 Sobic009G191300--Sobic003G359100 Sobic003G199800 Sobic003G199800 Sobic009G191300--Sobic003G199800 Sobic010G109500 Sobic010G109500 Sobic009G191300--Sobic010G109500 Sobic001G338700 Sobic001G338700 Sobic009G191300--Sobic001G338700 Sobic008G038300--Sobic002G040100 Sobic001G274600 Sobic001G274600 Sobic008G038300--Sobic001G274600 Sobic010G183032 Sobic010G183032 Sobic008G038300--Sobic010G183032 Sobic008G038300--Sobic003G209800 Sobic010G108401 Sobic010G108401 Sobic008G038300--Sobic010G108401 Sobic002G000500 Sobic002G000500 Sobic008G038300--Sobic002G000500 Sobic008G038300--Sobic009G191300 Sobic004G071800 Sobic004G071800 Sobic008G038300--Sobic004G071800 Sobic008G038300--Sobic003G199800 Sobic003G209800--Sobic003G052500 Sobic003G209800--Sobic010G109500 Sobic003G209800--Sobic001G274600 Sobic006G011100 Sobic006G011100 Sobic003G209800--Sobic006G011100 Sobic003G209800--Sobic008G038300 Sobic006G234100 Sobic006G234100 Sobic003G209800--Sobic006G234100 Sobic006G105900 Sobic006G105900 Sobic003G209800--Sobic006G105900 Sobic003G209800--Sobic004G071800 Sobic003G209800--Sobic002G000500 Sobic002G040100--Sobic002G000500 Sobic002G040100--Sobic008G038300 Sobic002G040100--Sobic003G199800 Sobic010G276400 Sobic010G276400 Sobic002G040100--Sobic010G276400 Sobic001G068400 Sobic001G068400 Sobic002G040100--Sobic001G068400 Sobic002G040100--Sobic010G109500 Sobic010G038500 Sobic010G038500 Sobic002G040100--Sobic010G038500 Sobic002G040100--Sobic010G183032 Sobic002G040100--Sobic003G209800 Sobic010G241000 Sobic010G241000 Sobic003G052500--Sobic010G241000 Sobic006G073500 Sobic006G073500 Sobic003G052500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic003G052500--Sobic004G056900 Sobic002G033900 Sobic002G033900 Sobic003G052500--Sobic002G033900 Sobic003G052500--Sobic006G105900 Sobic001G070500 Sobic001G070500 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic004G235200 Sobic004G235200 Sobic003G052500--Sobic004G235200 Sobic003G052500--Sobic001G338700 Sobic004G035500--Sobic003G359100 Sobic008G134800 Sobic008G134800 Sobic004G035500--Sobic008G134800 Sobic007G071500 Sobic007G071500 Sobic004G035500--Sobic007G071500 Sobic004G249800 Sobic004G249800 Sobic004G035500--Sobic004G249800 Sobic008G066100 Sobic008G066100 Sobic004G035500--Sobic008G066100 Sobic008G021300 Sobic008G021300 Sobic004G035500--Sobic008G021300 Sobic007G207800 Sobic007G207800 Sobic004G035500--Sobic007G207800 Sobic004G272100 Sobic004G272100 Sobic004G035500--Sobic004G272100 Sobic004G035500--Sobic006G105900 Sobic003G359100--Sobic004G035500 Sobic003G359100--Sobic008G134800 Sobic003G359100--Sobic008G066100 Sobic001G425400 Sobic001G425400 Sobic003G359100--Sobic001G425400 Sobic003G359100--Sobic007G207800 Sobic003G359100--Sobic004G249800 Sobic003G359100--Sobic007G071500 Sobic003G359100--Sobic004G272100 Sobic003G359100--Sobic006G105900 Sobic003G199800--Sobic002G040100 Sobic003G199800--Sobic010G276400 Sobic003G199800--Sobic002G000500 Sobic010G183100 Sobic010G183100 Sobic003G199800--Sobic010G183100 Sobic003G199800--Sobic004G035500 Sobic003G199800--Sobic008G038300 Sobic003G199800--Sobic010G109500 Sobic007G189700 Sobic007G189700 Sobic003G199800--Sobic007G189700 Sobic003G199800--Sobic009G191300 Sobic010G109500--Sobic006G234100 Sobic001G448400 Sobic001G448400 Sobic010G109500--Sobic001G448400 Sobic010G109500--Sobic006G011100 Sobic010G109500--Sobic003G209800 Sobic010G109500--Sobic010G276400 Sobic002G339200 Sobic002G339200 Sobic010G109500--Sobic002G339200 Sobic010G109500--Sobic002G000500 Sobic010G109500--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic010G109500--Sobic004G343300 Sobic001G338700--Sobic003G052500 Sobic001G338700--Sobic006G011100 Sobic001G338700--Sobic010G109500 Sobic001G338700--Sobic006G234100 Sobic001G338700--Sobic004G056900 Sobic001G338700--Sobic007G071500 Sobic001G338700--Sobic001G070500 Sobic001G338700--Sobic003G209800 Sobic001G338700--Sobic004G035500
Octagon: transcription factors


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