Gene annotation
Transcriptome id Sobic.003G231800.1
Synonym RL1, ATRL1, Sb03g028960, RSM2
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
MYB family transcription factor, putative, expressed
UniProt A0A1B6Q4W2
Pfam PF00249
Panther DB PTHR24078 PTHR24078:SF177
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G75250 : RAD-like 6
RAP-DB (Rice) LOC_Os05g50340.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a044693
Brachypodium KQK08887 , KQK04656
Barley HORVU1Hr1G091530.2 , HORVU1Hr1G091540.1 , HORVU1Hr1G091540.2 , HORVU1Hr1G091540.3 , HORVU1Hr1G091530.4 , HORVU1Hr1G091530.1 , HORVU1Hr1G091530.3
Wheat TraesCS1B02G449400 , TraesCS1B02G449100 , TraesCS1B02G449300 , TraesCS1A02G419000 , TraesCS1D02G427000 , TraesCS1D02G426700 , TraesCS1D02G426900 , TraesCS1B02G449000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G244300 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
2 Sobic.009G244600 MYB family transcription factor, putative, expressed -
3 Sobic.004G267000 RAD-like 6(PubMedID : 26465154)@MYB family transcription factor, putative, expressed -
4 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
5 Sobic.007G034300 expressed protein -
6 Sobic.001G520800 expressed protein -
7 Sobic.006G006700 - -
8 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.003G235500 expressed protein -
10 Sobic.003G241900 expressed protein -
11 Sobic.002G233300 Cupredoxin superfamily protein(PubMedID : 26465154)@plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.003G199800 expressed protein -
13 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
14 Sobic.010G038500 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.004G035700 - -
16 Sobic.007G189700 - -
17 Sobic.001G068400 - -
18 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
19 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
20 Sobic.010G030800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic003G231800 Sobic003G231800 Sobic009G244300 Sobic009G244300 Sobic003G231800--Sobic009G244300 Sobic009G244600 Sobic009G244600 Sobic003G231800--Sobic009G244600 Sobic004G267000 Sobic004G267000 Sobic003G231800--Sobic004G267000 Sobic010G183100 Sobic010G183100 Sobic003G231800--Sobic010G183100 Sobic007G034300 Sobic007G034300 Sobic003G231800--Sobic007G034300 Sobic001G520800 Sobic001G520800 Sobic003G231800--Sobic001G520800 Sobic006G006700 Sobic006G006700 Sobic003G231800--Sobic006G006700 Sobic009G254600 Sobic009G254600 Sobic003G231800--Sobic009G254600 Sobic003G235500 Sobic003G235500 Sobic003G231800--Sobic003G235500 Sobic009G244300--Sobic003G231800 Sobic009G244300--Sobic004G267000 Sobic009G244300--Sobic009G244600 Sobic009G244300--Sobic007G034300 Sobic003G241900 Sobic003G241900 Sobic009G244300--Sobic003G241900 Sobic009G244300--Sobic001G520800 Sobic004G305800 Sobic004G305800 Sobic009G244300--Sobic004G305800 Sobic008G104601 Sobic008G104601 Sobic009G244300--Sobic008G104601 Sobic003G199800 Sobic003G199800 Sobic009G244300--Sobic003G199800 Sobic009G244600--Sobic003G231800 Sobic009G244600--Sobic009G244300 Sobic009G244600--Sobic004G267000 Sobic009G244600--Sobic006G006700 Sobic009G244600--Sobic003G241900 Sobic003G237600 Sobic003G237600 Sobic009G244600--Sobic003G237600 Sobic009G244600--Sobic003G199800 Sobic001G068400 Sobic001G068400 Sobic009G244600--Sobic001G068400 Sobic001G189100 Sobic001G189100 Sobic009G244600--Sobic001G189100 Sobic004G267000--Sobic009G244300 Sobic004G267000--Sobic009G244600 Sobic004G267000--Sobic003G231800 Sobic004G267000--Sobic003G241900 Sobic001G076900 Sobic001G076900 Sobic004G267000--Sobic001G076900 Sobic005G056400 Sobic005G056400 Sobic004G267000--Sobic005G056400 Sobic002G116000 Sobic002G116000 Sobic004G267000--Sobic002G116000 Sobic004G267000--Sobic004G305800 Sobic007G004850 Sobic007G004850 Sobic004G267000--Sobic007G004850 Sobic004G035700 Sobic004G035700 Sobic010G183100--Sobic004G035700 Sobic007G189700 Sobic007G189700 Sobic010G183100--Sobic007G189700 Sobic008G081200 Sobic008G081200 Sobic010G183100--Sobic008G081200 Sobic010G183100--Sobic001G068400 Sobic010G183100--Sobic003G199800 Sobic010G038500 Sobic010G038500 Sobic010G183100--Sobic010G038500 Sobic002G040100 Sobic002G040100 Sobic010G183100--Sobic002G040100 Sobic010G183100--Sobic009G254600 Sobic009G222200 Sobic009G222200 Sobic010G183100--Sobic009G222200 Sobic007G034300--Sobic001G520800 Sobic005G165500 Sobic005G165500 Sobic007G034300--Sobic005G165500 Sobic007G034300--Sobic009G244300 Sobic008G053200 Sobic008G053200 Sobic007G034300--Sobic008G053200 Sobic004G283100 Sobic004G283100 Sobic007G034300--Sobic004G283100 Sobic007G034300--Sobic008G104601 Sobic002G233300 Sobic002G233300 Sobic007G034300--Sobic002G233300 Sobic007G034300--Sobic003G231800 Sobic007G034300--Sobic004G305800 Sobic001G520800--Sobic007G034300 Sobic005G039600 Sobic005G039600 Sobic001G520800--Sobic005G039600 Sobic001G520800--Sobic003G199800 Sobic001G520800--Sobic008G104601 Sobic001G520800--Sobic003G231800 Sobic001G520800--Sobic002G233300 Sobic001G520800--Sobic009G244300 Sobic001G520800--Sobic007G189700 Sobic003G431900 Sobic003G431900 Sobic001G520800--Sobic003G431900 Sobic002G195100 Sobic002G195100 Sobic006G006700--Sobic002G195100 Sobic006G006700--Sobic003G231800 Sobic006G006700--Sobic010G183100 Sobic006G006700--Sobic009G254600 Sobic005G065500 Sobic005G065500 Sobic006G006700--Sobic005G065500 Sobic006G006700--Sobic010G038500 Sobic006G006700--Sobic001G189100 Sobic006G006700--Sobic003G237600 Sobic009G254600--Sobic010G038500 Sobic009G254600--Sobic008G081200 Sobic009G254600--Sobic001G189100 Sobic009G254600--Sobic004G035700 Sobic009G254600--Sobic003G237600 Sobic009G254600--Sobic010G183100 Sobic009G254600--Sobic001G068400 Sobic009G254600--Sobic007G189700 Sobic010G030800 Sobic010G030800 Sobic003G235500--Sobic010G030800 Sobic003G235500--Sobic003G231800 Sobic003G235500--Sobic007G189700 Sobic003G235500--Sobic010G183100 Sobic003G036100 Sobic003G036100 Sobic003G235500--Sobic003G036100 Sobic003G235500--Sobic009G254600 Sobic003G235500--Sobic001G189100 Sobic001G406000 Sobic001G406000 Sobic003G235500--Sobic001G406000
Octagon: transcription factors


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