Gene annotation
Transcriptome id Sobic.004G267000.3,Sobic.004G267000.4,Sobic.004G267000.2
Synonym ATRL6, RSM3, Sb04g030510, RL6
Functional annotation RAD-like 6 (PubMedID : 26465154)
MYB family transcription factor, putative, expressed
UniProt C5Y0B3
Pfam PF00249
Panther DB PTHR24078 PTHR24078:SF177
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G75250 : RAD-like 6
RAP-DB (Rice) LOC_Os02g47744.3,LOC_Os02g47744.4 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a021727
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G244300 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
2 Sobic.009G244600 MYB family transcription factor, putative, expressed -
3 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
4 Sobic.003G241900 expressed protein -
5 Sobic.001G076900 Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed -
6 Sobic.005G056400 Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
7 Sobic.002G116000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Granule -bound starch synthase 1b (Os)(PubMedID : 27208977)@"GbssIIa(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659853)@starch synthase, putative, expressed K13679: granule-bound starch synthase
8 Sobic.004G305800 expressed protein -
9 Sobic.007G004850 - -
10 Sobic.001G104600 expressed protein -
11 Sobic.010G095000 kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
12 Sobic.003G234400 CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
13 Sobic.007G034300 expressed protein -
14 Sobic.008G104601 - -
15 Sobic.006G006700 - -
16 Sobic.003G370000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
17 Sobic.004G353700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.002G370600 - -
19 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G123800 expressed protein -


Gene co-expression network
sample Sobic004G267000 Sobic004G267000 Sobic009G244300 Sobic009G244300 Sobic004G267000--Sobic009G244300 Sobic009G244600 Sobic009G244600 Sobic004G267000--Sobic009G244600 Sobic003G231800 Sobic003G231800 Sobic004G267000--Sobic003G231800 Sobic003G241900 Sobic003G241900 Sobic004G267000--Sobic003G241900 Sobic001G076900 Sobic001G076900 Sobic004G267000--Sobic001G076900 Sobic005G056400 Sobic005G056400 Sobic004G267000--Sobic005G056400 Sobic002G116000 Sobic002G116000 Sobic004G267000--Sobic002G116000 Sobic004G305800 Sobic004G305800 Sobic004G267000--Sobic004G305800 Sobic007G004850 Sobic007G004850 Sobic004G267000--Sobic007G004850 Sobic009G244300--Sobic003G231800 Sobic009G244300--Sobic004G267000 Sobic009G244300--Sobic009G244600 Sobic007G034300 Sobic007G034300 Sobic009G244300--Sobic007G034300 Sobic009G244300--Sobic003G241900 Sobic001G520800 Sobic001G520800 Sobic009G244300--Sobic001G520800 Sobic009G244300--Sobic004G305800 Sobic008G104601 Sobic008G104601 Sobic009G244300--Sobic008G104601 Sobic003G199800 Sobic003G199800 Sobic009G244300--Sobic003G199800 Sobic009G244600--Sobic003G231800 Sobic009G244600--Sobic009G244300 Sobic009G244600--Sobic004G267000 Sobic006G006700 Sobic006G006700 Sobic009G244600--Sobic006G006700 Sobic009G244600--Sobic003G241900 Sobic003G237600 Sobic003G237600 Sobic009G244600--Sobic003G237600 Sobic009G244600--Sobic003G199800 Sobic001G068400 Sobic001G068400 Sobic009G244600--Sobic001G068400 Sobic001G189100 Sobic001G189100 Sobic009G244600--Sobic001G189100 Sobic003G231800--Sobic009G244300 Sobic003G231800--Sobic009G244600 Sobic003G231800--Sobic004G267000 Sobic010G183100 Sobic010G183100 Sobic003G231800--Sobic010G183100 Sobic003G231800--Sobic007G034300 Sobic003G231800--Sobic001G520800 Sobic003G231800--Sobic006G006700 Sobic009G254600 Sobic009G254600 Sobic003G231800--Sobic009G254600 Sobic003G235500 Sobic003G235500 Sobic003G231800--Sobic003G235500 Sobic003G241900--Sobic009G244300 Sobic010G153900 Sobic010G153900 Sobic003G241900--Sobic010G153900 Sobic002G421300 Sobic002G421300 Sobic003G241900--Sobic002G421300 Sobic003G241900--Sobic004G267000 Sobic003G241900--Sobic003G231800 Sobic003G241900--Sobic007G034300 Sobic003G241900--Sobic004G305800 Sobic003G241900--Sobic001G076900 Sobic010G201700 Sobic010G201700 Sobic003G241900--Sobic010G201700 Sobic001G076900--Sobic005G056400 Sobic003G370000 Sobic003G370000 Sobic001G076900--Sobic003G370000 Sobic010G095000 Sobic010G095000 Sobic001G076900--Sobic010G095000 Sobic001G020100 Sobic001G020100 Sobic001G076900--Sobic001G020100 Sobic001G076900--Sobic004G305800 Sobic003G234400 Sobic003G234400 Sobic001G076900--Sobic003G234400 Sobic005G202500 Sobic005G202500 Sobic001G076900--Sobic005G202500 Sobic002G370600 Sobic002G370600 Sobic001G076900--Sobic002G370600 Sobic004G283100 Sobic004G283100 Sobic001G076900--Sobic004G283100 Sobic007G161500 Sobic007G161500 Sobic005G056400--Sobic007G161500 Sobic005G056400--Sobic004G305800 Sobic003G127800 Sobic003G127800 Sobic005G056400--Sobic003G127800 Sobic005G056400--Sobic003G370000 Sobic010G188300 Sobic010G188300 Sobic005G056400--Sobic010G188300 Sobic005G056400--Sobic001G076900 Sobic001G491000 Sobic001G491000 Sobic005G056400--Sobic001G491000 Sobic001G329400 Sobic001G329400 Sobic005G056400--Sobic001G329400 Sobic006G057866 Sobic006G057866 Sobic005G056400--Sobic006G057866 Sobic008G180800 Sobic008G180800 Sobic002G116000--Sobic008G180800 Sobic008G149100 Sobic008G149100 Sobic002G116000--Sobic008G149100 Sobic007G046950 Sobic007G046950 Sobic002G116000--Sobic007G046950 Sobic002G047400 Sobic002G047400 Sobic002G116000--Sobic002G047400 Sobic001G104600 Sobic001G104600 Sobic002G116000--Sobic001G104600 Sobic002G116000--Sobic005G056400 Sobic010G104700 Sobic010G104700 Sobic002G116000--Sobic010G104700 Sobic010G101000 Sobic010G101000 Sobic002G116000--Sobic010G101000 Sobic001G046000 Sobic001G046000 Sobic002G116000--Sobic001G046000 Sobic004G305800--Sobic002G370600 Sobic004G305800--Sobic001G491000 Sobic004G305800--Sobic005G056400 Sobic009G129300 Sobic009G129300 Sobic004G305800--Sobic009G129300 Sobic004G268000 Sobic004G268000 Sobic004G305800--Sobic004G268000 Sobic004G305800--Sobic010G201700 Sobic004G305800--Sobic007G161500 Sobic003G431900 Sobic003G431900 Sobic004G305800--Sobic003G431900 Sobic006G238200 Sobic006G238200 Sobic004G305800--Sobic006G238200 Sobic007G004850--Sobic003G231800 Sobic007G004850--Sobic009G244300 Sobic007G004850--Sobic004G267000 Sobic007G004850--Sobic010G183100 Sobic007G004850--Sobic008G104601 Sobic008G081200 Sobic008G081200 Sobic007G004850--Sobic008G081200 Sobic007G004850--Sobic009G244600 Sobic007G214300 Sobic007G214300 Sobic007G004850--Sobic007G214300 Sobic007G004850--Sobic009G254600
Octagon: transcription factors


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