Gene annotation
Transcriptome id Sobic.001G123800.1
Synonym Sb01g010890
Functional annotation expressed protein
UniProt A0A1Z5S5E1
Pfam -
Panther DB PTHR15141 PTHR15141:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g47630.1 : expressed protein
MaizeGDB (Corn) Zm00025a007802
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G244600 MYB family transcription factor, putative, expressed -
2 Sobic.004G267000 RAD-like 6(PubMedID : 26465154)@MYB family transcription factor, putative, expressed -
3 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
4 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
5 Sobic.006G006700 - -
6 Sobic.007G198200 - -
7 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
8 Sobic.003G237600 expressed protein -
9 Sobic.003G036100 - -
10 Sobic.006G090300 Negative regulator of cytokinine(PubMedID : 30367619)@OsRR1 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
11 Sobic.004G353700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G214300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
14 Sobic.003G234400 CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
15 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.009G244300 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
17 Sobic.009G222200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
18 Sobic.010G030800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
19 Sobic.007G004850 - -
20 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G123800 Sobic001G123800 Sobic009G244600 Sobic009G244600 Sobic001G123800--Sobic009G244600 Sobic004G267000 Sobic004G267000 Sobic001G123800--Sobic004G267000 Sobic001G189100 Sobic001G189100 Sobic001G123800--Sobic001G189100 Sobic006G006700 Sobic006G006700 Sobic001G123800--Sobic006G006700 Sobic007G198200 Sobic007G198200 Sobic001G123800--Sobic007G198200 Sobic003G231800 Sobic003G231800 Sobic001G123800--Sobic003G231800 Sobic003G237600 Sobic003G237600 Sobic001G123800--Sobic003G237600 Sobic003G036100 Sobic003G036100 Sobic001G123800--Sobic003G036100 Sobic009G244600--Sobic003G231800 Sobic009G244300 Sobic009G244300 Sobic009G244600--Sobic009G244300 Sobic009G244600--Sobic004G267000 Sobic009G244600--Sobic006G006700 Sobic003G241900 Sobic003G241900 Sobic009G244600--Sobic003G241900 Sobic009G244600--Sobic003G237600 Sobic003G199800 Sobic003G199800 Sobic009G244600--Sobic003G199800 Sobic001G068400 Sobic001G068400 Sobic009G244600--Sobic001G068400 Sobic009G244600--Sobic001G189100 Sobic004G267000--Sobic009G244300 Sobic004G267000--Sobic009G244600 Sobic004G267000--Sobic003G231800 Sobic004G267000--Sobic003G241900 Sobic001G076900 Sobic001G076900 Sobic004G267000--Sobic001G076900 Sobic005G056400 Sobic005G056400 Sobic004G267000--Sobic005G056400 Sobic002G116000 Sobic002G116000 Sobic004G267000--Sobic002G116000 Sobic004G305800 Sobic004G305800 Sobic004G267000--Sobic004G305800 Sobic007G004850 Sobic007G004850 Sobic004G267000--Sobic007G004850 Sobic001G189100--Sobic001G189100 Sobic001G189100--Sobic003G237600 Sobic009G254600 Sobic009G254600 Sobic001G189100--Sobic009G254600 Sobic001G189100--Sobic003G036100 Sobic001G355600 Sobic001G355600 Sobic001G189100--Sobic001G355600 Sobic010G183100 Sobic010G183100 Sobic001G189100--Sobic010G183100 Sobic009G222200 Sobic009G222200 Sobic001G189100--Sobic009G222200 Sobic004G035700 Sobic004G035700 Sobic001G189100--Sobic004G035700 Sobic008G106200 Sobic008G106200 Sobic001G189100--Sobic008G106200 Sobic002G195100 Sobic002G195100 Sobic006G006700--Sobic002G195100 Sobic006G006700--Sobic003G231800 Sobic006G006700--Sobic010G183100 Sobic006G006700--Sobic009G254600 Sobic005G065500 Sobic005G065500 Sobic006G006700--Sobic005G065500 Sobic010G038500 Sobic010G038500 Sobic006G006700--Sobic010G038500 Sobic006G006700--Sobic001G189100 Sobic006G006700--Sobic003G237600 Sobic007G198200--Sobic003G036100 Sobic004G353700 Sobic004G353700 Sobic007G198200--Sobic004G353700 Sobic003G234400 Sobic003G234400 Sobic007G198200--Sobic003G234400 Sobic007G198200--Sobic004G267000 Sobic007G198200--Sobic005G056400 Sobic001G406000 Sobic001G406000 Sobic007G198200--Sobic001G406000 Sobic007G198200--Sobic003G231800 Sobic007G198200--Sobic001G076900 Sobic007G198200--Sobic001G123800 Sobic003G231800--Sobic009G244300 Sobic003G231800--Sobic009G244600 Sobic003G231800--Sobic004G267000 Sobic003G231800--Sobic010G183100 Sobic007G034300 Sobic007G034300 Sobic003G231800--Sobic007G034300 Sobic001G520800 Sobic001G520800 Sobic003G231800--Sobic001G520800 Sobic003G231800--Sobic006G006700 Sobic003G231800--Sobic009G254600 Sobic003G235500 Sobic003G235500 Sobic003G231800--Sobic003G235500 Sobic003G237600--Sobic001G189100 Sobic003G237600--Sobic001G355600 Sobic003G237600--Sobic003G036100 Sobic003G237600--Sobic009G254600 Sobic003G237600--Sobic009G222200 Sobic003G237600--Sobic010G183100 Sobic003G237600--Sobic004G035700 Sobic003G237600--Sobic008G106200 Sobic003G036100--Sobic001G189100 Sobic003G036100--Sobic003G237600 Sobic003G036100--Sobic004G353700 Sobic007G189700 Sobic007G189700 Sobic003G036100--Sobic007G189700 Sobic010G030800 Sobic010G030800 Sobic003G036100--Sobic010G030800 Sobic003G036100--Sobic009G222200 Sobic003G036100--Sobic009G254600 Sobic001G111700 Sobic001G111700 Sobic003G036100--Sobic001G111700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.