Gene annotation
Transcriptome id Sobic.006G090300.1
Synonym ARR3, two-component response regulator, Sb06g017550, ORR1
Functional annotation Negative regulator of cytokinine (PubMedID : 30367619)
OsRR1 type-A response regulator, expressed
UniProt C5Y8V6
Pfam PF00072
Panther DB PTHR26402 PTHR26402:SF549
NCBI CDD -
KEGG Orthology K14492; two-component response regulator ARR-A family
Gene Ontology GO:0000160; phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT1G59940 : response regulator 3
RAP-DB (Rice) LOC_Os04g36070.1 : OsRR1 type-A response regulator, expressed
MaizeGDB (Corn) Zm00025a056126 , Zm00025a011270
Brachypodium KQJ82846
Barley HORVU2Hr1G077000.6 , HORVU2Hr1G077000.7 , HORVU2Hr1G077000.4 , HORVU2Hr1G077000.5 , HORVU2Hr1G077000.2 , HORVU2Hr1G077000.3 , HORVU2Hr1G077000.1
Wheat TraesCS2A02G309700 , TraesCS2D02G308000 , TraesCS2B02G326800 , TraesCS2B02G326800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G090400 OsRR1 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
2 Sobic.009G243500 polygalacturonase, putative, expressed -
3 Sobic.002G213000 - -
4 Sobic.005G030500 OsRR10 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
5 Sobic.003G237600 expressed protein -
6 Sobic.001G068400 - -
7 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
8 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
9 Sobic.010G030800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
10 Sobic.001G123800 expressed protein -
11 Sobic.003G036100 - -
12 Sobic.004G035700 - -
13 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
14 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
15 Sobic.008G030200 LTPL9 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.007G189700 - -
17 Sobic.010G093500 CSLA3 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
18 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
19 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
20 Sobic.002G110000 glycosyl hydrolase, putative, expressed K01183: chitinase


Gene co-expression network
sample Sobic006G090300 Sobic006G090300 Sobic006G090400 Sobic006G090400 Sobic006G090300--Sobic006G090400 Sobic009G243500 Sobic009G243500 Sobic006G090300--Sobic009G243500 Sobic002G213000 Sobic002G213000 Sobic006G090300--Sobic002G213000 Sobic005G030500 Sobic005G030500 Sobic006G090300--Sobic005G030500 Sobic003G237600 Sobic003G237600 Sobic006G090300--Sobic003G237600 Sobic001G068400 Sobic001G068400 Sobic006G090300--Sobic001G068400 Sobic001G189100 Sobic001G189100 Sobic006G090300--Sobic001G189100 Sobic010G030800 Sobic010G030800 Sobic006G090300--Sobic010G030800 Sobic006G090400--Sobic006G090300 Sobic001G344400 Sobic001G344400 Sobic006G090400--Sobic001G344400 Sobic007G005850 Sobic007G005850 Sobic006G090400--Sobic007G005850 Sobic002G329400 Sobic002G329400 Sobic006G090400--Sobic002G329400 Sobic006G090400--Sobic003G237600 Sobic006G090400--Sobic010G030800 Sobic006G090400--Sobic001G189100 Sobic006G090400--Sobic002G213000 Sobic002G040100 Sobic002G040100 Sobic009G243500--Sobic002G040100 Sobic006G011100 Sobic006G011100 Sobic009G243500--Sobic006G011100 Sobic008G038300 Sobic008G038300 Sobic009G243500--Sobic008G038300 Sobic002G000500 Sobic002G000500 Sobic009G243500--Sobic002G000500 Sobic010G109500 Sobic010G109500 Sobic009G243500--Sobic010G109500 Sobic001G274600 Sobic001G274600 Sobic009G243500--Sobic001G274600 Sobic010G276400 Sobic010G276400 Sobic009G243500--Sobic010G276400 Sobic009G243500--Sobic001G068400 Sobic003G209800 Sobic003G209800 Sobic009G243500--Sobic003G209800 Sobic004G035700 Sobic004G035700 Sobic002G213000--Sobic004G035700 Sobic010G183100 Sobic010G183100 Sobic002G213000--Sobic010G183100 Sobic002G213000--Sobic001G068400 Sobic001G297400 Sobic001G297400 Sobic002G213000--Sobic001G297400 Sobic009G254600 Sobic009G254600 Sobic002G213000--Sobic009G254600 Sobic002G213000--Sobic001G189100 Sobic002G213000--Sobic003G237600 Sobic008G081200 Sobic008G081200 Sobic002G213000--Sobic008G081200 Sobic005G039600 Sobic005G039600 Sobic005G030500--Sobic005G039600 Sobic005G030500--Sobic003G237600 Sobic005G030500--Sobic008G081200 Sobic005G030500--Sobic002G213000 Sobic007G189700 Sobic007G189700 Sobic005G030500--Sobic007G189700 Sobic005G030500--Sobic001G189100 Sobic005G030500--Sobic009G254600 Sobic003G036100 Sobic003G036100 Sobic005G030500--Sobic003G036100 Sobic003G237600--Sobic001G189100 Sobic001G355600 Sobic001G355600 Sobic003G237600--Sobic001G355600 Sobic003G237600--Sobic003G036100 Sobic003G237600--Sobic009G254600 Sobic009G222200 Sobic009G222200 Sobic003G237600--Sobic009G222200 Sobic003G237600--Sobic010G183100 Sobic003G237600--Sobic004G035700 Sobic008G106200 Sobic008G106200 Sobic003G237600--Sobic008G106200 Sobic001G068400--Sobic002G040100 Sobic010G038500 Sobic010G038500 Sobic001G068400--Sobic010G038500 Sobic001G068400--Sobic010G183100 Sobic001G068400--Sobic004G035700 Sobic001G068400--Sobic008G081200 Sobic001G068400--Sobic010G276400 Sobic001G068400--Sobic002G000500 Sobic003G199800 Sobic003G199800 Sobic001G068400--Sobic003G199800 Sobic010G183032 Sobic010G183032 Sobic001G068400--Sobic010G183032 Sobic001G189100--Sobic001G189100 Sobic001G189100--Sobic003G237600 Sobic001G189100--Sobic009G254600 Sobic001G189100--Sobic003G036100 Sobic001G189100--Sobic001G355600 Sobic001G189100--Sobic010G183100 Sobic001G189100--Sobic009G222200 Sobic001G189100--Sobic004G035700 Sobic001G189100--Sobic008G106200 Sobic010G030800--Sobic007G189700 Sobic010G030800--Sobic009G222200 Sobic010G030800--Sobic010G183100 Sobic005G202600 Sobic005G202600 Sobic010G030800--Sobic005G202600 Sobic003G235500 Sobic003G235500 Sobic010G030800--Sobic003G235500 Sobic004G353700 Sobic004G353700 Sobic010G030800--Sobic004G353700 Sobic010G030800--Sobic003G036100 Sobic010G030800--Sobic001G189100
Octagon: transcription factors


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