Gene annotation
Transcriptome id Sobic.006G090400.1
Synonym Sb06g017560, ARR3
Functional annotation OsRR1 type-A response regulator, expressed
UniProt A0A1B6PL28
Pfam PF00072
Panther DB PTHR26402 PTHR26402:SF549
NCBI CDD -
KEGG Orthology K14492; two-component response regulator ARR-A family
Gene Ontology GO:0000160; phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT1G59940 : response regulator 3
RAP-DB (Rice) LOC_Os04g36070.1 : OsRR1 type-A response regulator, expressed
MaizeGDB (Corn) Zm00025a056126 , Zm00025a011270
Brachypodium KQJ82846
Barley HORVU2Hr1G077000.6 , HORVU2Hr1G077000.7 , HORVU2Hr1G077000.4 , HORVU2Hr1G077000.5 , HORVU2Hr1G077000.2 , HORVU2Hr1G077000.3 , HORVU2Hr1G077000.1
Wheat TraesCS2B02G326800 , TraesCS2B02G326800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G090300 Negative regulator of cytokinine(PubMedID : 30367619)@OsRR1 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
2 Sobic.001G344400 3-oxoacyl-synthase, putative, expressed K09458: fabF, OXSM, 3-oxoacyl-[acyl-carrier-protein] synthase II
3 Sobic.007G005850 - -
4 Sobic.002G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@beta-amylase, putative, expressed -
5 Sobic.003G237600 expressed protein -
6 Sobic.010G030800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
7 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
8 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
9 Sobic.002G213000 - -
10 Sobic.006G046100 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
11 Sobic.004G018150 - -
12 Sobic.009G222200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
13 Sobic.005G202600 tropinone reductase 2, putative, expressed -
14 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.003G036100 - -
16 Sobic.001G068400 - -
17 Sobic.005G030500 OsRR10 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
18 Sobic.004G035700 - -
19 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
20 Sobic.001G300800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic006G090400 Sobic006G090400 Sobic006G090300 Sobic006G090300 Sobic006G090400--Sobic006G090300 Sobic001G344400 Sobic001G344400 Sobic006G090400--Sobic001G344400 Sobic007G005850 Sobic007G005850 Sobic006G090400--Sobic007G005850 Sobic002G329400 Sobic002G329400 Sobic006G090400--Sobic002G329400 Sobic003G237600 Sobic003G237600 Sobic006G090400--Sobic003G237600 Sobic010G030800 Sobic010G030800 Sobic006G090400--Sobic010G030800 Sobic001G189100 Sobic001G189100 Sobic006G090400--Sobic001G189100 Sobic002G213000 Sobic002G213000 Sobic006G090400--Sobic002G213000 Sobic006G090300--Sobic006G090400 Sobic009G243500 Sobic009G243500 Sobic006G090300--Sobic009G243500 Sobic006G090300--Sobic002G213000 Sobic005G030500 Sobic005G030500 Sobic006G090300--Sobic005G030500 Sobic006G090300--Sobic003G237600 Sobic001G068400 Sobic001G068400 Sobic006G090300--Sobic001G068400 Sobic006G090300--Sobic001G189100 Sobic006G090300--Sobic010G030800 Sobic001G344400--Sobic002G329400 Sobic001G344400--Sobic006G090400 Sobic001G344400--Sobic007G005850 Sobic005G202600 Sobic005G202600 Sobic001G344400--Sobic005G202600 Sobic001G344400--Sobic010G030800 Sobic004G018150 Sobic004G018150 Sobic001G344400--Sobic004G018150 Sobic009G222200 Sobic009G222200 Sobic001G344400--Sobic009G222200 Sobic001G361700 Sobic001G361700 Sobic001G344400--Sobic001G361700 Sobic003G199800 Sobic003G199800 Sobic001G344400--Sobic003G199800 Sobic007G005850--Sobic006G090400 Sobic007G005850--Sobic002G329400 Sobic007G005850--Sobic001G344400 Sobic007G005850--Sobic004G018150 Sobic007G005850--Sobic005G202600 Sobic007G005850--Sobic010G030800 Sobic001G123800 Sobic001G123800 Sobic007G005850--Sobic001G123800 Sobic009G244600 Sobic009G244600 Sobic007G005850--Sobic009G244600 Sobic004G267000 Sobic004G267000 Sobic007G005850--Sobic004G267000 Sobic003G234400 Sobic003G234400 Sobic002G329400--Sobic003G234400 Sobic002G329400--Sobic005G202600 Sobic003G036100 Sobic003G036100 Sobic002G329400--Sobic003G036100 Sobic002G329400--Sobic010G030800 Sobic002G329400--Sobic001G344400 Sobic004G353700 Sobic004G353700 Sobic002G329400--Sobic004G353700 Sobic010G095000 Sobic010G095000 Sobic002G329400--Sobic010G095000 Sobic004G026300 Sobic004G026300 Sobic002G329400--Sobic004G026300 Sobic001G076900 Sobic001G076900 Sobic002G329400--Sobic001G076900 Sobic003G237600--Sobic001G189100 Sobic001G355600 Sobic001G355600 Sobic003G237600--Sobic001G355600 Sobic003G237600--Sobic003G036100 Sobic009G254600 Sobic009G254600 Sobic003G237600--Sobic009G254600 Sobic003G237600--Sobic009G222200 Sobic010G183100 Sobic010G183100 Sobic003G237600--Sobic010G183100 Sobic004G035700 Sobic004G035700 Sobic003G237600--Sobic004G035700 Sobic008G106200 Sobic008G106200 Sobic003G237600--Sobic008G106200 Sobic007G189700 Sobic007G189700 Sobic010G030800--Sobic007G189700 Sobic010G030800--Sobic009G222200 Sobic010G030800--Sobic010G183100 Sobic010G030800--Sobic005G202600 Sobic003G235500 Sobic003G235500 Sobic010G030800--Sobic003G235500 Sobic010G030800--Sobic004G353700 Sobic010G030800--Sobic003G036100 Sobic010G030800--Sobic001G189100 Sobic001G189100--Sobic001G189100 Sobic001G189100--Sobic003G237600 Sobic001G189100--Sobic009G254600 Sobic001G189100--Sobic003G036100 Sobic001G189100--Sobic001G355600 Sobic001G189100--Sobic010G183100 Sobic001G189100--Sobic009G222200 Sobic001G189100--Sobic004G035700 Sobic001G189100--Sobic008G106200 Sobic002G213000--Sobic004G035700 Sobic002G213000--Sobic010G183100 Sobic002G213000--Sobic001G068400 Sobic001G297400 Sobic001G297400 Sobic002G213000--Sobic001G297400 Sobic002G213000--Sobic009G254600 Sobic002G213000--Sobic001G189100 Sobic002G213000--Sobic003G237600 Sobic008G081200 Sobic008G081200 Sobic002G213000--Sobic008G081200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.