Gene annotation
Transcriptome id Sobic.001G300800.1,Sobic.001G300800.2
Synonym ATEXPB2, Sb01g029270, EXPB2, ATHEXPBETA1.4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expansin precursor, putative, expressed
UniProt C5WSF0 , A0A1Z5S8J9
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65680 : expansin B2
RAP-DB (Rice) LOC_Os10g40720.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051985 , Zm00025a051983 , Zm00025a051980 , Zm00025a032217 , Zm00025a051976 , Zm00025a051978 , Zm00025a003327 , Zm00025a003332 , Zm00025a003330 , Zm00025a003331 , Zm00025a000113 , Zm00025a003251
Brachypodium KQK07389 , KQJ97767 , KQJ97766 , KQJ97765 , KQJ97764 , KQJ97762 , KQJ97768 , KQK24135
Barley HORVU0Hr1G016380.2 , HORVU0Hr1G016380.3 , HORVU0Hr1G016380.4 , HORVU3Hr1G073120.1 , HORVU3Hr1G076110.1 , HORVU0Hr1G005490.2 , HORVU0Hr1G005490.1 , HORVU6Hr1G005810.1 , HORVU6Hr1G005810.2 , HORVU6Hr1G005810.3 , HORVU6Hr1G005810.4 , HORVU3Hr1G105170.1 , HORVU1Hr1G054240.1 , HORVU1Hr1G054240.2 , HORVU6Hr1G005760.1 , HORVU3Hr1G001920.1 , HORVU3Hr1G001920.3 , HORVU3Hr1G001920.2 , HORVU4Hr1G088140.3 , HORVU4Hr1G088140.2 , HORVU4Hr1G088140.1 , HORVU1Hr1G054250.9 , HORVU1Hr1G054250.8 , HORVU1Hr1G054250.3 , HORVU1Hr1G054250.2 , HORVU1Hr1G054250.1 , HORVU1Hr1G054250.7 , HORVU1Hr1G054250.6 , HORVU3Hr1G105180.1 , HORVU1Hr1G054250.4 , HORVU4Hr1G088080.8 , HORVU4Hr1G088080.9 , HORVU4Hr1G088080.2 , HORVU4Hr1G088080.3 , HORVU4Hr1G088080.1 , HORVU4Hr1G088080.6 , HORVU4Hr1G088080.7 , HORVU4Hr1G088080.4 , HORVU4Hr1G088080.5 , HORVU6Hr1G055090.1 , HORVU6Hr1G055090.2 , HORVU3Hr1G073140.1 , HORVU4Hr1G088080.10 , HORVU4Hr1G088080.11 , HORVU4Hr1G088080.12 , HORVU4Hr1G088080.13
Wheat TraesCS4B02G375200 , TraesCS1D02G215500 , TraesCS1D02G215500 , TraesCS5D02G086000 , TraesCS1D02G215100 , TraesCS1B02G226000 , TraesCS3D02G476800 , TraesCS5B02G079400 , TraesCS3B02G524500 , TraesCS3D02G474800 , TraesCS6D02G037700 , TraesCS3A02G480000 , TraesCS3D02G000500 , TraesCS1D02G215100 , TraesCSU02G085500 , TraesCS3D02G000400 , TraesCS3B02G014300 , TraesCS4D02G361700 , TraesCS6D02G037500 , TraesCS1B02G225700 , TraesCS1B02G225700 , TraesCS5A02G537300 , TraesCS1B02G226100 , TraesCS1B02G226100 , TraesCS1B02G226000 , TraesCS1B02G225900 , TraesCS1A02G212300 , TraesCS6A02G032700 , TraesCS6B02G046100 , TraesCS1A02G212000 , TraesCS6B02G046200 , TraesCS2A02G458900 , TraesCS1D02G215300 , TraesCS1A02G212600 , TraesCS5A02G073100 , TraesCS6A02G217100 , TraesCS6D02G198400 , TraesCS3D02G476700 , TraesCS1A02G212400 , TraesCS6B02G245700 , TraesCS3A02G479900 , TraesCS1D02G215400 , TraesCS4B02G375600 , TraesCS6B02G046300 , TraesCS5A02G538000 , TraesCS6B02G046000 , TraesCS6B02G046400 , TraesCS4D02G361900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G300800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G095000 zinc knuckle family protein, expressed K03257: translation initiation factor 4A
2 Sobic.010G093500 CSLA3 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
3 Sobic.003G338801 - -
4 Sobic.010G094301 - -
5 Sobic.003G069100 regulator of ribonuclease, putative, expressed -
6 Sobic.001G301600 expansin precursor, putative, expressed -
7 Sobic.001G361700 expressed protein -
8 Sobic.001G262301 - -
9 Sobic.002G213000 - -
10 Sobic.006G046100 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
11 Sobic.003G237600 expressed protein -
12 Sobic.001G068400 - -
13 Sobic.003G344700 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
14 Sobic.009G243500 polygalacturonase, putative, expressed -
15 Sobic.002G000500 isoflavone reductase, putative, expressed -
16 Sobic.006G090400 OsRR1 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
17 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
18 Sobic.004G166000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
19 Sobic.006G127350 - -
20 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta


Gene co-expression network
sample Sobic001G300800 Sobic001G300800 Sobic004G095000 Sobic004G095000 Sobic001G300800--Sobic004G095000 Sobic010G093500 Sobic010G093500 Sobic001G300800--Sobic010G093500 Sobic003G338801 Sobic003G338801 Sobic001G300800--Sobic003G338801 Sobic010G094301 Sobic010G094301 Sobic001G300800--Sobic010G094301 Sobic003G069100 Sobic003G069100 Sobic001G300800--Sobic003G069100 Sobic001G301600 Sobic001G301600 Sobic001G300800--Sobic001G301600 Sobic001G361700 Sobic001G361700 Sobic001G300800--Sobic001G361700 Sobic001G262301 Sobic001G262301 Sobic001G300800--Sobic001G262301 Sobic002G213000 Sobic002G213000 Sobic001G300800--Sobic002G213000 Sobic004G166000 Sobic004G166000 Sobic004G095000--Sobic004G166000 Sobic001G189100 Sobic001G189100 Sobic004G095000--Sobic001G189100 Sobic003G237600 Sobic003G237600 Sobic004G095000--Sobic003G237600 Sobic009G254600 Sobic009G254600 Sobic004G095000--Sobic009G254600 Sobic003G036100 Sobic003G036100 Sobic004G095000--Sobic003G036100 Sobic001G355600 Sobic001G355600 Sobic004G095000--Sobic001G355600 Sobic009G222200 Sobic009G222200 Sobic004G095000--Sobic009G222200 Sobic010G030800 Sobic010G030800 Sobic004G095000--Sobic010G030800 Sobic006G127350 Sobic006G127350 Sobic010G093500--Sobic006G127350 Sobic010G093500--Sobic010G030800 Sobic010G093500--Sobic004G095000 Sobic010G093500--Sobic003G069100 Sobic008G067200 Sobic008G067200 Sobic010G093500--Sobic008G067200 Sobic010G093500--Sobic001G300800 Sobic005G202600 Sobic005G202600 Sobic010G093500--Sobic005G202600 Sobic008G105850 Sobic008G105850 Sobic010G093500--Sobic008G105850 Sobic003G131000 Sobic003G131000 Sobic010G093500--Sobic003G131000 Sobic007G116950 Sobic007G116950 Sobic003G338801--Sobic007G116950 Sobic001G464700 Sobic001G464700 Sobic003G338801--Sobic001G464700 Sobic003G099400 Sobic003G099400 Sobic003G338801--Sobic003G099400 Sobic001G448400 Sobic001G448400 Sobic003G338801--Sobic001G448400 Sobic003G338801--Sobic010G094301 Sobic009G091850 Sobic009G091850 Sobic003G338801--Sobic009G091850 Sobic001G382100 Sobic001G382100 Sobic003G338801--Sobic001G382100 Sobic008G051000 Sobic008G051000 Sobic003G338801--Sobic008G051000 Sobic002G357000 Sobic002G357000 Sobic003G338801--Sobic002G357000 Sobic003G057900 Sobic003G057900 Sobic010G094301--Sobic003G057900 Sobic001G353800 Sobic001G353800 Sobic010G094301--Sobic001G353800 Sobic001G192100 Sobic001G192100 Sobic010G094301--Sobic001G192100 Sobic009G132900 Sobic009G132900 Sobic010G094301--Sobic009G132900 Sobic006G234100 Sobic006G234100 Sobic010G094301--Sobic006G234100 Sobic010G109500 Sobic010G109500 Sobic010G094301--Sobic010G109500 Sobic002G339200 Sobic002G339200 Sobic010G094301--Sobic002G339200 Sobic010G094301--Sobic001G448400 Sobic006G264201 Sobic006G264201 Sobic010G094301--Sobic006G264201 Sobic007G171600 Sobic007G171600 Sobic003G069100--Sobic007G171600 Sobic003G069100--Sobic008G067200 Sobic010G276400 Sobic010G276400 Sobic003G069100--Sobic010G276400 Sobic004G026300 Sobic004G026300 Sobic003G069100--Sobic004G026300 Sobic002G000500 Sobic002G000500 Sobic003G069100--Sobic002G000500 Sobic010G019700 Sobic010G019700 Sobic003G069100--Sobic010G019700 Sobic001G068400 Sobic001G068400 Sobic003G069100--Sobic001G068400 Sobic001G379700 Sobic001G379700 Sobic003G069100--Sobic001G379700 Sobic003G069100--Sobic003G057900 Sobic003G344700 Sobic003G344700 Sobic001G301600--Sobic003G344700 Sobic003G371100 Sobic003G371100 Sobic001G301600--Sobic003G371100 Sobic001G301600--Sobic002G213000 Sobic001G301600--Sobic001G355600 Sobic001G301500 Sobic001G301500 Sobic001G301600--Sobic001G301500 Sobic001G301600--Sobic003G237600 Sobic001G301600--Sobic002G357000 Sobic001G301600--Sobic001G300800 Sobic007G058200 Sobic007G058200 Sobic001G301600--Sobic007G058200 Sobic004G026700 Sobic004G026700 Sobic001G361700--Sobic004G026700 Sobic001G361700--Sobic002G000500 Sobic001G361700--Sobic001G068400 Sobic010G183032 Sobic010G183032 Sobic001G361700--Sobic010G183032 Sobic002G040100 Sobic002G040100 Sobic001G361700--Sobic002G040100 Sobic010G108401 Sobic010G108401 Sobic001G361700--Sobic010G108401 Sobic010G183100 Sobic010G183100 Sobic001G361700--Sobic010G183100 Sobic006G011100 Sobic006G011100 Sobic001G361700--Sobic006G011100 Sobic010G038500 Sobic010G038500 Sobic001G361700--Sobic010G038500 Sobic001G262301--Sobic010G094301 Sobic001G262301--Sobic001G300800 Sobic004G224200 Sobic004G224200 Sobic001G262301--Sobic004G224200 Sobic001G215600 Sobic001G215600 Sobic001G262301--Sobic001G215600 Sobic010G100200 Sobic010G100200 Sobic001G262301--Sobic010G100200 Sobic001G262301--Sobic003G338801 Sobic006G046100 Sobic006G046100 Sobic001G262301--Sobic006G046100 Sobic006G200800 Sobic006G200800 Sobic001G262301--Sobic006G200800 Sobic009G243500 Sobic009G243500 Sobic001G262301--Sobic009G243500 Sobic004G035700 Sobic004G035700 Sobic002G213000--Sobic004G035700 Sobic002G213000--Sobic010G183100 Sobic002G213000--Sobic001G068400 Sobic001G297400 Sobic001G297400 Sobic002G213000--Sobic001G297400 Sobic002G213000--Sobic009G254600 Sobic002G213000--Sobic001G189100 Sobic002G213000--Sobic003G237600 Sobic008G081200 Sobic008G081200 Sobic002G213000--Sobic008G081200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.