Gene annotation
Transcriptome id Sobic.009G243500.1
Synonym Sb09g029500
Functional annotation polygalacturonase, putative, expressed
UniProt C5YWE0
Pfam PF12708
Panther DB PTHR31375 PTHR31375:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60590 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os01g44970.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT72456 , PNT72457
Barley HORVU1Hr1G091430.2 , HORVU1Hr1G091430.5 , HORVU1Hr1G091430.18 , HORVU1Hr1G091430.12 , HORVU1Hr1G091430.13 , HORVU1Hr1G091430.10 , HORVU1Hr1G091430.11 , HORVU1Hr1G091430.16 , HORVU1Hr1G091430.17 , HORVU1Hr1G091430.14 , HORVU1Hr1G091430.15 , HORVU1Hr1G091430.1 , HORVU3Hr1G056270.16 , HORVU1Hr1G091430.4 , HORVU3Hr1G056270.10 , HORVU3Hr1G056270.12 , HORVU3Hr1G056270.20 , HORVU3Hr1G056270.21 , HORVU3Hr1G056270.22 , HORVU3Hr1G056270.23 , HORVU3Hr1G056270.24 , HORVU3Hr1G056270.25 , HORVU3Hr1G056270.3 , HORVU3Hr1G056270.2 , HORVU3Hr1G056270.5 , HORVU3Hr1G056270.4 , HORVU3Hr1G056270.7 , HORVU3Hr1G056270.6 , HORVU3Hr1G056270.15 , HORVU3Hr1G056270.14 , HORVU3Hr1G056270.17 , HORVU1Hr1G091430.3 , HORVU3Hr1G056270.11 , HORVU3Hr1G056270.26 , HORVU1Hr1G091430.6 , HORVU1Hr1G091430.7 , HORVU1Hr1G091430.8 , HORVU1Hr1G091430.9 , HORVU3Hr1G056270.27 , HORVU3Hr1G056270.19 , HORVU3Hr1G056270.18 , HORVU1Hr1G091430.20
Wheat TraesCS1A02G418000 , TraesCS1A02G418000 , TraesCS1D02G425600 , TraesCS1D02G425600 , TraesCS3B02G258600 , TraesCS3A02G225800 , TraesCS3A02G225800 , TraesCS3B02G258600 , TraesCS3B02G258600 , TraesCS3D02G223900 , TraesCS1B02G448100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
2 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
4 Sobic.002G000500 isoflavone reductase, putative, expressed -
5 Sobic.010G109500 expressed protein -
6 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
7 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
8 Sobic.001G068400 - -
9 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
10 Sobic.010G183032 - -
11 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
12 Sobic.010G108401 - -
13 Sobic.006G136500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
14 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
15 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
16 Sobic.009G132900 PPDK(PubMedID : 19549309)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@phyruvate phosphate dikinase(PubMedID : 26904072)@-(PubMedID : 26976818)@pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed K01006: pyruvate, orthophosphate dikinase
17 Sobic.003G199800 expressed protein -
18 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
19 Sobic.004G071800 - -
20 Sobic.005G042100 - -


Gene co-expression network
sample Sobic009G243500 Sobic009G243500 Sobic002G040100 Sobic002G040100 Sobic009G243500--Sobic002G040100 Sobic006G011100 Sobic006G011100 Sobic009G243500--Sobic006G011100 Sobic008G038300 Sobic008G038300 Sobic009G243500--Sobic008G038300 Sobic002G000500 Sobic002G000500 Sobic009G243500--Sobic002G000500 Sobic010G109500 Sobic010G109500 Sobic009G243500--Sobic010G109500 Sobic001G274600 Sobic001G274600 Sobic009G243500--Sobic001G274600 Sobic010G276400 Sobic010G276400 Sobic009G243500--Sobic010G276400 Sobic001G068400 Sobic001G068400 Sobic009G243500--Sobic001G068400 Sobic003G209800 Sobic003G209800 Sobic009G243500--Sobic003G209800 Sobic002G040100--Sobic002G000500 Sobic002G040100--Sobic008G038300 Sobic003G199800 Sobic003G199800 Sobic002G040100--Sobic003G199800 Sobic002G040100--Sobic010G276400 Sobic002G040100--Sobic001G068400 Sobic002G040100--Sobic010G109500 Sobic010G038500 Sobic010G038500 Sobic002G040100--Sobic010G038500 Sobic010G183032 Sobic010G183032 Sobic002G040100--Sobic010G183032 Sobic002G040100--Sobic003G209800 Sobic006G011100--Sobic010G109500 Sobic006G011100--Sobic002G000500 Sobic006G011100--Sobic001G274600 Sobic006G011100--Sobic003G209800 Sobic006G234100 Sobic006G234100 Sobic006G011100--Sobic006G234100 Sobic003G052500 Sobic003G052500 Sobic006G011100--Sobic003G052500 Sobic002G339200 Sobic002G339200 Sobic006G011100--Sobic002G339200 Sobic001G448400 Sobic001G448400 Sobic006G011100--Sobic001G448400 Sobic006G011100--Sobic002G040100 Sobic008G038300--Sobic002G040100 Sobic008G038300--Sobic001G274600 Sobic008G038300--Sobic010G183032 Sobic008G038300--Sobic003G209800 Sobic010G108401 Sobic010G108401 Sobic008G038300--Sobic010G108401 Sobic008G038300--Sobic002G000500 Sobic009G191300 Sobic009G191300 Sobic008G038300--Sobic009G191300 Sobic004G071800 Sobic004G071800 Sobic008G038300--Sobic004G071800 Sobic008G038300--Sobic003G199800 Sobic002G000500--Sobic002G040100 Sobic002G000500--Sobic006G011100 Sobic002G000500--Sobic010G109500 Sobic002G000500--Sobic010G276400 Sobic002G000500--Sobic003G199800 Sobic002G000500--Sobic008G038300 Sobic007G171600 Sobic007G171600 Sobic002G000500--Sobic007G171600 Sobic002G000500--Sobic003G209800 Sobic002G000500--Sobic001G274600 Sobic010G109500--Sobic006G234100 Sobic010G109500--Sobic001G448400 Sobic010G109500--Sobic006G011100 Sobic010G109500--Sobic003G209800 Sobic010G109500--Sobic010G276400 Sobic010G109500--Sobic002G339200 Sobic010G109500--Sobic002G000500 Sobic010G109500--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic010G109500--Sobic004G343300 Sobic001G274600--Sobic008G038300 Sobic001G274600--Sobic004G071800 Sobic001G274600--Sobic003G209800 Sobic001G274600--Sobic006G011100 Sobic001G274600--Sobic003G052500 Sobic001G274600--Sobic010G183032 Sobic001G274600--Sobic002G000500 Sobic001G274600--Sobic010G108401 Sobic006G073500 Sobic006G073500 Sobic001G274600--Sobic006G073500 Sobic010G276400--Sobic010G109500 Sobic010G276400--Sobic003G199800 Sobic010G276400--Sobic002G000500 Sobic010G276400--Sobic002G040100 Sobic010G276400--Sobic006G234100 Sobic010G276400--Sobic001G068400 Sobic010G276400--Sobic008G038300 Sobic010G276400--Sobic007G171600 Sobic010G276400--Sobic003G209800 Sobic001G068400--Sobic002G040100 Sobic001G068400--Sobic010G038500 Sobic010G183100 Sobic010G183100 Sobic001G068400--Sobic010G183100 Sobic004G035700 Sobic004G035700 Sobic001G068400--Sobic004G035700 Sobic008G081200 Sobic008G081200 Sobic001G068400--Sobic008G081200 Sobic001G068400--Sobic010G276400 Sobic001G068400--Sobic002G000500 Sobic001G068400--Sobic003G199800 Sobic001G068400--Sobic010G183032 Sobic003G209800--Sobic003G052500 Sobic003G209800--Sobic010G109500 Sobic003G209800--Sobic001G274600 Sobic003G209800--Sobic006G011100 Sobic003G209800--Sobic008G038300 Sobic003G209800--Sobic006G234100 Sobic006G105900 Sobic006G105900 Sobic003G209800--Sobic006G105900 Sobic003G209800--Sobic004G071800 Sobic003G209800--Sobic002G000500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.