Gene annotation
Transcriptome id Sobic.005G042100.1
Synonym
Functional annotation -
UniProt C5Y516
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.002G082950 - -
3 Sobic.010G108401 - -
4 Sobic.008G038300 uncharacterized protein ycf53, putative, expressed -
5 Sobic.010G183032 - -
6 Sobic.004G071800 - -
7 Sobic.002G352301 - -
8 Sobic.005G152600 - -
9 Sobic.009G243500 polygalacturonase, putative, expressed -
10 Sobic.009G077200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
11 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
12 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
13 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
15 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
17 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
18 Sobic.001G066600 mTERF domain containing protein, expressed -
19 Sobic.010G128000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
20 Sobic.002G201200 - -


Gene co-expression network
sample Sobic005G042100 Sobic005G042100 Sobic001G274600 Sobic001G274600 Sobic005G042100--Sobic001G274600 Sobic002G082950 Sobic002G082950 Sobic005G042100--Sobic002G082950 Sobic010G108401 Sobic010G108401 Sobic005G042100--Sobic010G108401 Sobic008G038300 Sobic008G038300 Sobic005G042100--Sobic008G038300 Sobic010G183032 Sobic010G183032 Sobic005G042100--Sobic010G183032 Sobic004G071800 Sobic004G071800 Sobic005G042100--Sobic004G071800 Sobic002G352301 Sobic002G352301 Sobic005G042100--Sobic002G352301 Sobic005G152600 Sobic005G152600 Sobic005G042100--Sobic005G152600 Sobic009G243500 Sobic009G243500 Sobic005G042100--Sobic009G243500 Sobic001G274600--Sobic008G038300 Sobic001G274600--Sobic004G071800 Sobic003G209800 Sobic003G209800 Sobic001G274600--Sobic003G209800 Sobic006G011100 Sobic006G011100 Sobic001G274600--Sobic006G011100 Sobic003G052500 Sobic003G052500 Sobic001G274600--Sobic003G052500 Sobic001G274600--Sobic010G183032 Sobic002G000500 Sobic002G000500 Sobic001G274600--Sobic002G000500 Sobic001G274600--Sobic010G108401 Sobic006G073500 Sobic006G073500 Sobic001G274600--Sobic006G073500 Sobic002G082950--Sobic001G274600 Sobic009G229700 Sobic009G229700 Sobic002G082950--Sobic009G229700 Sobic002G033900 Sobic002G033900 Sobic002G082950--Sobic002G033900 Sobic002G082950--Sobic006G073500 Sobic005G087000 Sobic005G087000 Sobic002G082950--Sobic005G087000 Sobic002G082950--Sobic005G152600 Sobic002G082950--Sobic005G042100 Sobic002G082950--Sobic008G038300 Sobic001G066600 Sobic001G066600 Sobic002G082950--Sobic001G066600 Sobic010G108401--Sobic010G183032 Sobic010G108401--Sobic008G038300 Sobic004G035700 Sobic004G035700 Sobic010G108401--Sobic004G035700 Sobic010G108401--Sobic001G274600 Sobic001G297400 Sobic001G297400 Sobic010G108401--Sobic001G297400 Sobic002G040100 Sobic002G040100 Sobic010G108401--Sobic002G040100 Sobic001G068400 Sobic001G068400 Sobic010G108401--Sobic001G068400 Sobic010G183100 Sobic010G183100 Sobic010G108401--Sobic010G183100 Sobic010G108401--Sobic002G000500 Sobic008G038300--Sobic002G040100 Sobic008G038300--Sobic001G274600 Sobic008G038300--Sobic010G183032 Sobic008G038300--Sobic003G209800 Sobic008G038300--Sobic010G108401 Sobic008G038300--Sobic002G000500 Sobic009G191300 Sobic009G191300 Sobic008G038300--Sobic009G191300 Sobic008G038300--Sobic004G071800 Sobic003G199800 Sobic003G199800 Sobic008G038300--Sobic003G199800 Sobic010G183032--Sobic010G108401 Sobic010G183032--Sobic008G038300 Sobic010G183032--Sobic004G035700 Sobic010G183032--Sobic001G274600 Sobic010G183032--Sobic002G040100 Sobic010G183032--Sobic001G297400 Sobic010G183032--Sobic001G068400 Sobic010G183032--Sobic010G183100 Sobic010G183032--Sobic002G000500 Sobic004G071800--Sobic001G274600 Sobic004G071800--Sobic003G209800 Sobic004G272600 Sobic004G272600 Sobic004G071800--Sobic004G272600 Sobic004G071800--Sobic003G052500 Sobic004G071800--Sobic008G038300 Sobic004G071800--Sobic006G073500 Sobic002G064000 Sobic002G064000 Sobic004G071800--Sobic002G064000 Sobic004G071800--Sobic002G033900 Sobic001G070500 Sobic001G070500 Sobic004G071800--Sobic001G070500 Sobic002G352301--Sobic005G042100 Sobic002G201200 Sobic002G201200 Sobic002G352301--Sobic002G201200 Sobic002G352301--Sobic002G082950 Sobic002G352301--Sobic001G274600 Sobic002G352301--Sobic005G152600 Sobic002G352301--Sobic009G229700 Sobic002G102900 Sobic002G102900 Sobic002G352301--Sobic002G102900 Sobic002G352301--Sobic006G073500 Sobic002G352301--Sobic001G066600 Sobic005G152600--Sobic009G229700 Sobic005G152600--Sobic005G087000 Sobic005G152600--Sobic006G073500 Sobic009G165200 Sobic009G165200 Sobic005G152600--Sobic009G165200 Sobic005G152600--Sobic002G033900 Sobic001G046900 Sobic001G046900 Sobic005G152600--Sobic001G046900 Sobic003G055300 Sobic003G055300 Sobic005G152600--Sobic003G055300 Sobic005G152600--Sobic001G066600 Sobic005G152600--Sobic001G274600 Sobic009G243500--Sobic002G040100 Sobic009G243500--Sobic006G011100 Sobic009G243500--Sobic008G038300 Sobic009G243500--Sobic002G000500 Sobic010G109500 Sobic010G109500 Sobic009G243500--Sobic010G109500 Sobic009G243500--Sobic001G274600 Sobic010G276400 Sobic010G276400 Sobic009G243500--Sobic010G276400 Sobic009G243500--Sobic001G068400 Sobic009G243500--Sobic003G209800
Octagon: transcription factors


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