Gene annotation
| Transcriptome id | Sobic.010G276400.2,Sobic.010G276400.3 |
|---|---|
| Synonym | Sb10g031020, PSY,phytoene synthase 1, SbPSY1 |
| Functional annotation | "Phytoene synthase, chloroplast precursor (Zm)" (PubMedID : 27208977) "Phytoene synthase, chloroplast precursor (Zm)" (PubMedID : 27208977) carotenoid biosynthesi (PubMedID : 18162592) phytoene synthase, chloroplast precursor, putative, expressed |
| UniProt | A0A097PL40 , D1GIX3 , A9UKC2 |
| Pfam | PF00494 |
| Panther DB | PTHR31480 PTHR31480:SF2 |
| NCBI CDD | KOG1459; Squalene synthetase |
| KEGG Orthology | K02291; 15-cis-phytoene synthase |
| Gene Ontology | GO:0016740; transferase activity GO:0009058biosynthetic process |
Orthologs (automatic annotation)
| TAIR | AT5G17230 : PHYTOENE SYNTHASE |
|---|---|
| RAP-DB (Rice) | LOC_Os06g51290.1,LOC_Os06g51290.2 : phytoene synthase, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a041684 |
| Brachypodium | KQK16627 , KQK16628 , KQK16629 |
| Barley | HORVU7Hr1G120660.22 , HORVU7Hr1G120660.21 , HORVU7Hr1G120660.20 , HORVU7Hr1G120660.12 , HORVU7Hr1G120660.13 , HORVU7Hr1G120660.10 , HORVU7Hr1G120660.16 , HORVU7Hr1G120660.17 , HORVU7Hr1G120660.14 , HORVU7Hr1G120660.15 , HORVU7Hr1G120660.18 , HORVU7Hr1G120660.19 , HORVU7Hr1G120660.8 , HORVU7Hr1G120660.9 , HORVU7Hr1G120660.1 , HORVU7Hr1G120660.2 , HORVU7Hr1G120660.3 , HORVU7Hr1G120660.4 , HORVU7Hr1G120660.5 , HORVU7Hr1G120660.6 , HORVU7Hr1G120660.7 |
| Wheat | TraesCS7A02G557300 , TraesCS7A02G557300 , TraesCS7D02G553300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G109500 | expressed protein | - |
| 2 | Sobic.003G199800 | expressed protein | - |
| 3 | Sobic.002G000500 | isoflavone reductase, putative, expressed | - |
| 4 | Sobic.002G040100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- | - |
| 5 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 6 | Sobic.001G068400 | - | - |
| 7 | Sobic.008G038300 | uncharacterized protein ycf53, putative, expressed | - |
| 8 | Sobic.007G171600 | Ser/Thr protein phosphatase family protein, putative, expressed | K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase |
| 9 | Sobic.003G209800 | Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed | K08912: light-harvesting complex II chlorophyll a/b binding protein 1 |
| 10 | Sobic.004G026300 | heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 11 | Sobic.001G448400 | UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed | - |
| 12 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 13 | Sobic.006G011100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 14 | Sobic.004G023200 | Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed | - |
| 15 | Sobic.003G131000 | expressed protein | - |
| 16 | Sobic.002G180400 | isochorismate synthase 1, chloroplast precursor, putative, expressed | K02552: menaquinone-specific isochorismate synthase |
| 17 | Sobic.009G243500 | polygalacturonase, putative, expressed | - |
| 18 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 19 | Sobic.003G069100 | regulator of ribonuclease, putative, expressed | - |
| 20 | Sobic.010G183100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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