Gene annotation
| Transcriptome id | Sobic.007G171600.1 |
|---|---|
| Synonym | Sb07g024380 |
| Functional annotation | Ser/Thr protein phosphatase family protein, putative, expressed |
| UniProt | C5YN95 |
| Pfam | PF00149 |
| Panther DB | PTHR16509 PTHR16509:SF2 |
| NCBI CDD | - |
| KEGG Orthology | K01517; manganese-dependent ADP-ribose/CDP-alcohol diphosphatase |
| Gene Ontology | GO:0016787; hydrolase activity |
Orthologs (automatic annotation)
| TAIR | AT4G24730 : Calcineurin-like metallo-phosphoesterase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g48840.2 : Ser/Thr protein phosphatase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a030574 |
| Brachypodium | - |
| Barley | HORVU7Hr1G058860.2 , HORVU7Hr1G058860.3 , HORVU7Hr1G058860.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G000500 | isoflavone reductase, putative, expressed | - |
| 2 | Sobic.003G069100 | regulator of ribonuclease, putative, expressed | - |
| 3 | Sobic.010G109500 | expressed protein | - |
| 4 | Sobic.010G276400 | "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed | K02291: 15-cis-phytoene synthase |
| 5 | Sobic.003G199800 | expressed protein | - |
| 6 | Sobic.004G023200 | Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed | - |
| 7 | Sobic.002G040100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- | - |
| 8 | Sobic.001G338700 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 9 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 10 | Sobic.002G180400 | isochorismate synthase 1, chloroplast precursor, putative, expressed | K02552: menaquinone-specific isochorismate synthase |
| 11 | Sobic.009G196800 | cytochrome P450, putative, expressed | - |
| 12 | Sobic.006G011100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.004G026300 | heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 14 | Sobic.003G131000 | expressed protein | - |
| 15 | Sobic.009G132900 | PPDK(PubMedID : 19549309)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@phyruvate phosphate dikinase(PubMedID : 26904072)@-(PubMedID : 26976818)@pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed | K01006: pyruvate, orthophosphate dikinase |
| 16 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 17 | Sobic.004G026700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@transcription factor, putative, expressed | K09060: plant G-box-binding factor |
| 18 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 19 | Sobic.001G068400 | - | - |
| 20 | Sobic.001G448400 | UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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