Gene annotation
Transcriptome id Sobic.003G338801.1
Synonym -
Functional annotation -
UniProt A0A1W0W071
Pfam PF03330 PF01357
Panther DB PTHR31867 PTHR31867:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G69530 : expansin A1
RAP-DB (Rice) LOC_Os01g60770.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a023911 , Zm00025a000709 , Zm00025a027043 , Zm00025a043994 , Zm00025a019879 , Zm00025a008818 , Zm00025a024073 , Zm00025a033209 , Zm00025a019852 , Zm00025a019856 , Zm00025a019849 , Zm00025a055602 , Zm00025a016421 , Zm00025a022026 , Zm00025a053441
Brachypodium KQJ81960 , KQJ96856 , KQK23578 , KQK23579 , KQK01952 , KQK10365 , KQK05753 , KQK12421 , KQK21504
Barley HORVU3Hr1G076670.2 , HORVU1Hr1G036910.1 , HORVU1Hr1G069830.2 , HORVU1Hr1G069830.1 , HORVU1Hr1G069830.7 , HORVU1Hr1G069830.6 , HORVU1Hr1G069830.5 , HORVU1Hr1G069830.4 , HORVU3Hr1G034030.4 , HORVU3Hr1G081180.4 , HORVU3Hr1G081180.3 , HORVU3Hr1G081180.2 , HORVU3Hr1G081180.1 , HORVU3Hr1G076640.2 , HORVU3Hr1G076640.3 , HORVU3Hr1G076640.1 , HORVU3Hr1G076640.4 , HORVU3Hr1G081230.9 , HORVU3Hr1G081230.8 , HORVU3Hr1G081230.5 , HORVU3Hr1G081230.3 , HORVU3Hr1G081230.2 , HORVU5Hr1G106500.3 , HORVU3Hr1G075210.1 , HORVU3Hr1G075210.2 , HORVU4Hr1G072400.1 , HORVU2Hr1G093690.1 , HORVU2Hr1G093690.2 , HORVU2Hr1G010800.1 , HORVU3Hr1G076670.1 , HORVU5Hr1G113580.5 , HORVU5Hr1G113580.4 , HORVU5Hr1G113580.6 , HORVU5Hr1G113580.3 , HORVU5Hr1G113580.2 , HORVU3Hr1G034030.3 , HORVU3Hr1G034030.2 , HORVU3Hr1G034030.1 , HORVU3Hr1G034030.5
Wheat TraesCS4D02G245900 , TraesCS3B02G348000 , TraesCS3D02G338400 , TraesCS4A02G470100 , TraesCS2D02G065000 , TraesCS3D02G313200 , TraesCS4B02G271200 , TraesCS6A02G307900 , TraesCS2A02G393700 , TraesCS3D02G313400 , TraesCS4A02G339200 , TraesCS5D02G494800 , TraesCS5A02G481200 , TraesCS7D02G019600 , TraesCS4B02G271100 , TraesCS3B02G376800 , TraesCS1D02G299700 , TraesCS2B02G078800 , TraesCS2A02G066600 , TraesCS1A02G300200 , TraesCS1A02G300200 , TraesCS4B02G246500 , TraesCS4A02G034300 , TraesCS2B02G411700 , TraesCS3A02G317900 , TraesCS1B02G310300 , TraesCS3D02G175800 , TraesCS7B02G293800 , TraesCS6B02G336500 , TraesCS5D02G535500 , TraesCS7D02G387400 , TraesCS7D02G387400 , TraesCS4D02G245700 , TraesCS4D02G245800 , TraesCS6D02G287100 , TraesCS6D02G287100 , TraesCS3A02G344800 , TraesCS4D02G270200 , TraesCS4B02G272600 , TraesCS4A02G058300 , TraesCS4D02G270400 , TraesCS4A02G058400 , TraesCS5B02G494400 , TraesCS3A02G165900 , TraesCS3B02G376900 , TraesCS3D02G176000 , TraesCS3D02G338600 , TraesCS3B02G200100 , TraesCS3D02G313300 , TraesCS3A02G165600 , TraesCS7A02G022400 , TraesCS3B02G199900 , TraesCS2D02G391600
Populus PNT51889


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G116950 - -
2 Sobic.001G464700 - -
3 Sobic.003G099400 cyclophilin-type(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
4 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
5 Sobic.010G094301 - -
6 Sobic.009G091850 - -
7 Sobic.001G382100 Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed K08902: photosystem II Psb27 protein
8 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
9 Sobic.002G357000 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.001G527000 PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
11 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
12 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
13 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
14 Sobic.002G264800 unknown(PubMedID : 29017446)@expressed protein -
15 Sobic.001G379700 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
16 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
17 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
18 Sobic.010G109500 expressed protein -
19 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
20 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase


Gene co-expression network
sample Sobic003G338801 Sobic003G338801 Sobic007G116950 Sobic007G116950 Sobic003G338801--Sobic007G116950 Sobic001G464700 Sobic001G464700 Sobic003G338801--Sobic001G464700 Sobic003G099400 Sobic003G099400 Sobic003G338801--Sobic003G099400 Sobic001G448400 Sobic001G448400 Sobic003G338801--Sobic001G448400 Sobic010G094301 Sobic010G094301 Sobic003G338801--Sobic010G094301 Sobic009G091850 Sobic009G091850 Sobic003G338801--Sobic009G091850 Sobic001G382100 Sobic001G382100 Sobic003G338801--Sobic001G382100 Sobic008G051000 Sobic008G051000 Sobic003G338801--Sobic008G051000 Sobic002G357000 Sobic002G357000 Sobic003G338801--Sobic002G357000 Sobic007G116950--Sobic008G051000 Sobic007G116950--Sobic009G091850 Sobic001G203000 Sobic001G203000 Sobic007G116950--Sobic001G203000 Sobic006G264201 Sobic006G264201 Sobic007G116950--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic007G116950--Sobic004G238500 Sobic007G116950--Sobic003G099400 Sobic009G091800 Sobic009G091800 Sobic007G116950--Sobic009G091800 Sobic004G114800 Sobic004G114800 Sobic007G116950--Sobic004G114800 Sobic007G116950--Sobic001G382100 Sobic010G255600 Sobic010G255600 Sobic001G464700--Sobic010G255600 Sobic004G036100 Sobic004G036100 Sobic001G464700--Sobic004G036100 Sobic001G464700--Sobic001G382100 Sobic001G464700--Sobic003G099400 Sobic001G464700--Sobic007G116950 Sobic001G464700--Sobic009G091850 Sobic001G464700--Sobic001G203000 Sobic001G192100 Sobic001G192100 Sobic001G464700--Sobic001G192100 Sobic001G464700--Sobic008G051000 Sobic003G099400--Sobic001G382100 Sobic003G099400--Sobic007G116950 Sobic003G099400--Sobic004G238500 Sobic003G099400--Sobic008G051000 Sobic007G029300 Sobic007G029300 Sobic003G099400--Sobic007G029300 Sobic003G099400--Sobic010G255600 Sobic003G099400--Sobic009G091850 Sobic003G099400--Sobic006G264201 Sobic003G099400--Sobic001G203000 Sobic006G234100 Sobic006G234100 Sobic001G448400--Sobic006G234100 Sobic002G339200 Sobic002G339200 Sobic001G448400--Sobic002G339200 Sobic004G343300 Sobic004G343300 Sobic001G448400--Sobic004G343300 Sobic002G329600 Sobic002G329600 Sobic001G448400--Sobic002G329600 Sobic010G109500 Sobic010G109500 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic001G448400--Sobic007G029300 Sobic010G241000 Sobic010G241000 Sobic001G448400--Sobic010G241000 Sobic001G078000 Sobic001G078000 Sobic001G448400--Sobic001G078000 Sobic003G057900 Sobic003G057900 Sobic010G094301--Sobic003G057900 Sobic001G353800 Sobic001G353800 Sobic010G094301--Sobic001G353800 Sobic010G094301--Sobic001G192100 Sobic009G132900 Sobic009G132900 Sobic010G094301--Sobic009G132900 Sobic010G094301--Sobic006G234100 Sobic010G094301--Sobic010G109500 Sobic010G094301--Sobic002G339200 Sobic010G094301--Sobic001G448400 Sobic010G094301--Sobic006G264201 Sobic009G091850--Sobic007G116950 Sobic001G527000 Sobic001G527000 Sobic009G091850--Sobic001G527000 Sobic009G091850--Sobic008G051000 Sobic009G091850--Sobic010G255600 Sobic003G132100 Sobic003G132100 Sobic009G091850--Sobic003G132100 Sobic003G433900 Sobic003G433900 Sobic009G091850--Sobic003G433900 Sobic009G091850--Sobic001G382100 Sobic007G004600 Sobic007G004600 Sobic009G091850--Sobic007G004600 Sobic009G091850--Sobic009G091800 Sobic001G382100--Sobic010G255600 Sobic001G382100--Sobic003G099400 Sobic001G382100--Sobic004G238500 Sobic001G382100--Sobic008G051000 Sobic001G382100--Sobic001G203000 Sobic001G382100--Sobic009G091850 Sobic001G382100--Sobic007G116950 Sobic001G382100--Sobic004G114800 Sobic006G100900 Sobic006G100900 Sobic001G382100--Sobic006G100900 Sobic008G051000--Sobic009G091800 Sobic008G051000--Sobic004G238500 Sobic008G051000--Sobic007G116950 Sobic008G051000--Sobic001G203000 Sobic008G051000--Sobic003G132100 Sobic008G051000--Sobic006G264201 Sobic008G051000--Sobic009G091850 Sobic004G234200 Sobic004G234200 Sobic008G051000--Sobic004G234200 Sobic002G297300 Sobic002G297300 Sobic008G051000--Sobic002G297300 Sobic002G357000--Sobic003G338801 Sobic002G357000--Sobic010G094301 Sobic002G357000--Sobic001G464700 Sobic002G264800 Sobic002G264800 Sobic002G357000--Sobic002G264800 Sobic001G301600 Sobic001G301600 Sobic002G357000--Sobic001G301600 Sobic002G357000--Sobic001G192100 Sobic003G069100 Sobic003G069100 Sobic002G357000--Sobic003G069100 Sobic001G215600 Sobic001G215600 Sobic002G357000--Sobic001G215600 Sobic002G357000--Sobic003G099400
Octagon: transcription factors


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