Gene annotation
Transcriptome id Sobic.004G095000.1
Synonym Sb04g007820, RH4, EIF4A1, TIF4A1
Functional annotation zinc knuckle family protein, expressed
UniProt A0A194YPR8
Pfam PF00271 PF00270 PF14111
Panther DB PTHR24031 PTHR24031:SF259
NCBI CDD KOG0327; Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases KOG0328Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily
KEGG Orthology K03257; translation initiation factor 4A
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G13920 : eukaryotic translation initiation factor 4A1
RAP-DB (Rice) LOC_Os02g12840.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a020179
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G166000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
2 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
3 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
4 Sobic.003G237600 expressed protein -
5 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
6 Sobic.003G036100 - -
7 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.009G222200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
9 Sobic.010G030800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
10 Sobic.004G035700 - -
11 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
12 Sobic.001G300800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
13 Sobic.008G106200 cytochrome P450, putative, expressed -
14 Sobic.007G189700 - -
15 Sobic.002G213000 - -
16 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
17 Sobic.001G068400 - -
18 Sobic.003G326400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
20 Sobic.010G038500 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic004G095000 Sobic004G095000 Sobic004G166000 Sobic004G166000 Sobic004G095000--Sobic004G166000 Sobic001G189100 Sobic001G189100 Sobic004G095000--Sobic001G189100 Sobic003G237600 Sobic003G237600 Sobic004G095000--Sobic003G237600 Sobic009G254600 Sobic009G254600 Sobic004G095000--Sobic009G254600 Sobic003G036100 Sobic003G036100 Sobic004G095000--Sobic003G036100 Sobic001G355600 Sobic001G355600 Sobic004G095000--Sobic001G355600 Sobic009G222200 Sobic009G222200 Sobic004G095000--Sobic009G222200 Sobic010G030800 Sobic010G030800 Sobic004G095000--Sobic010G030800 Sobic004G166000--Sobic004G095000 Sobic004G166000--Sobic003G036100 Sobic004G166000--Sobic001G189100 Sobic004G166000--Sobic003G237600 Sobic004G166000--Sobic009G254600 Sobic004G166000--Sobic001G355600 Sobic004G166000--Sobic009G222200 Sobic004G166000--Sobic010G030800 Sobic001G189100--Sobic001G189100 Sobic001G189100--Sobic003G237600 Sobic001G189100--Sobic009G254600 Sobic001G189100--Sobic003G036100 Sobic001G189100--Sobic001G355600 Sobic010G183100 Sobic010G183100 Sobic001G189100--Sobic010G183100 Sobic001G189100--Sobic009G222200 Sobic004G035700 Sobic004G035700 Sobic001G189100--Sobic004G035700 Sobic008G106200 Sobic008G106200 Sobic001G189100--Sobic008G106200 Sobic003G237600--Sobic001G189100 Sobic003G237600--Sobic001G355600 Sobic003G237600--Sobic003G036100 Sobic003G237600--Sobic009G254600 Sobic003G237600--Sobic009G222200 Sobic003G237600--Sobic010G183100 Sobic003G237600--Sobic004G035700 Sobic003G237600--Sobic008G106200 Sobic010G038500 Sobic010G038500 Sobic009G254600--Sobic010G038500 Sobic008G081200 Sobic008G081200 Sobic009G254600--Sobic008G081200 Sobic009G254600--Sobic001G189100 Sobic009G254600--Sobic004G035700 Sobic009G254600--Sobic003G237600 Sobic009G254600--Sobic010G183100 Sobic001G068400 Sobic001G068400 Sobic009G254600--Sobic001G068400 Sobic007G189700 Sobic007G189700 Sobic009G254600--Sobic007G189700 Sobic003G036100--Sobic001G189100 Sobic003G036100--Sobic003G237600 Sobic004G353700 Sobic004G353700 Sobic003G036100--Sobic004G353700 Sobic003G036100--Sobic007G189700 Sobic003G036100--Sobic010G030800 Sobic003G036100--Sobic009G222200 Sobic003G036100--Sobic009G254600 Sobic001G111700 Sobic001G111700 Sobic003G036100--Sobic001G111700 Sobic001G355600--Sobic001G189100 Sobic001G355600--Sobic003G237600 Sobic001G355600--Sobic009G222200 Sobic003G371100 Sobic003G371100 Sobic001G355600--Sobic003G371100 Sobic001G355600--Sobic003G036100 Sobic001G355600--Sobic010G183100 Sobic001G355600--Sobic008G106200 Sobic001G355600--Sobic009G254600 Sobic009G222200--Sobic010G183100 Sobic009G222200--Sobic003G237600 Sobic009G222200--Sobic001G189100 Sobic009G222200--Sobic010G030800 Sobic009G222200--Sobic001G355600 Sobic009G222200--Sobic007G189700 Sobic009G222200--Sobic003G036100 Sobic009G222200--Sobic004G035700 Sobic010G030800--Sobic007G189700 Sobic010G030800--Sobic009G222200 Sobic010G030800--Sobic010G183100 Sobic005G202600 Sobic005G202600 Sobic010G030800--Sobic005G202600 Sobic003G235500 Sobic003G235500 Sobic010G030800--Sobic003G235500 Sobic010G030800--Sobic004G353700 Sobic010G030800--Sobic003G036100 Sobic010G030800--Sobic001G189100
Octagon: transcription factors


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