Gene annotation
Transcriptome id Sobic.003G036100.1
Synonym
Functional annotation -
UniProt A0A1B6Q159
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
2 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
3 Sobic.003G237600 expressed protein -
4 Sobic.004G353700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.007G189700 - -
6 Sobic.010G030800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
7 Sobic.009G222200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
8 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.001G111700 alpha/beta-Hydrolases superfamily protein(PubMedID : 26465154)@alpha/beta-Hydrolases superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
10 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
11 Sobic.003G234400 CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
12 Sobic.004G026300 heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
13 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
14 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.005G202600 tropinone reductase 2, putative, expressed -
16 Sobic.004G035700 - -
17 Sobic.010G038500 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.003G235500 expressed protein -
19 Sobic.002G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@beta-amylase, putative, expressed -
20 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -


Gene co-expression network
sample Sobic003G036100 Sobic003G036100 Sobic001G189100 Sobic001G189100 Sobic003G036100--Sobic001G189100 Sobic003G237600 Sobic003G237600 Sobic003G036100--Sobic003G237600 Sobic004G353700 Sobic004G353700 Sobic003G036100--Sobic004G353700 Sobic007G189700 Sobic007G189700 Sobic003G036100--Sobic007G189700 Sobic010G030800 Sobic010G030800 Sobic003G036100--Sobic010G030800 Sobic009G222200 Sobic009G222200 Sobic003G036100--Sobic009G222200 Sobic009G254600 Sobic009G254600 Sobic003G036100--Sobic009G254600 Sobic001G111700 Sobic001G111700 Sobic003G036100--Sobic001G111700 Sobic001G189100--Sobic001G189100 Sobic001G189100--Sobic003G237600 Sobic001G189100--Sobic009G254600 Sobic001G189100--Sobic003G036100 Sobic001G355600 Sobic001G355600 Sobic001G189100--Sobic001G355600 Sobic010G183100 Sobic010G183100 Sobic001G189100--Sobic010G183100 Sobic001G189100--Sobic009G222200 Sobic004G035700 Sobic004G035700 Sobic001G189100--Sobic004G035700 Sobic008G106200 Sobic008G106200 Sobic001G189100--Sobic008G106200 Sobic003G237600--Sobic001G189100 Sobic003G237600--Sobic001G355600 Sobic003G237600--Sobic003G036100 Sobic003G237600--Sobic009G254600 Sobic003G237600--Sobic009G222200 Sobic003G237600--Sobic010G183100 Sobic003G237600--Sobic004G035700 Sobic003G237600--Sobic008G106200 Sobic003G234400 Sobic003G234400 Sobic004G353700--Sobic003G234400 Sobic004G353700--Sobic003G036100 Sobic004G353700--Sobic007G189700 Sobic004G353700--Sobic010G030800 Sobic001G406000 Sobic001G406000 Sobic004G353700--Sobic001G406000 Sobic004G353700--Sobic009G222200 Sobic002G214300 Sobic002G214300 Sobic004G353700--Sobic002G214300 Sobic005G202600 Sobic005G202600 Sobic004G353700--Sobic005G202600 Sobic004G353700--Sobic001G111700 Sobic007G189700--Sobic010G183100 Sobic007G189700--Sobic004G035700 Sobic007G189700--Sobic010G030800 Sobic003G199800 Sobic003G199800 Sobic007G189700--Sobic003G199800 Sobic008G081200 Sobic008G081200 Sobic007G189700--Sobic008G081200 Sobic007G189700--Sobic009G222200 Sobic007G189700--Sobic009G254600 Sobic002G040100 Sobic002G040100 Sobic007G189700--Sobic002G040100 Sobic007G189700--Sobic001G406000 Sobic010G030800--Sobic007G189700 Sobic010G030800--Sobic009G222200 Sobic010G030800--Sobic010G183100 Sobic010G030800--Sobic005G202600 Sobic003G235500 Sobic003G235500 Sobic010G030800--Sobic003G235500 Sobic010G030800--Sobic004G353700 Sobic010G030800--Sobic003G036100 Sobic010G030800--Sobic001G189100 Sobic009G222200--Sobic010G183100 Sobic009G222200--Sobic003G237600 Sobic009G222200--Sobic001G189100 Sobic009G222200--Sobic010G030800 Sobic009G222200--Sobic001G355600 Sobic009G222200--Sobic007G189700 Sobic009G222200--Sobic003G036100 Sobic009G222200--Sobic004G035700 Sobic010G038500 Sobic010G038500 Sobic009G254600--Sobic010G038500 Sobic009G254600--Sobic008G081200 Sobic009G254600--Sobic001G189100 Sobic009G254600--Sobic004G035700 Sobic009G254600--Sobic003G237600 Sobic009G254600--Sobic010G183100 Sobic001G068400 Sobic001G068400 Sobic009G254600--Sobic001G068400 Sobic009G254600--Sobic007G189700 Sobic004G026300 Sobic004G026300 Sobic001G111700--Sobic004G026300 Sobic001G111700--Sobic010G183100 Sobic001G111700--Sobic007G189700 Sobic004G351700 Sobic004G351700 Sobic001G111700--Sobic004G351700 Sobic001G111700--Sobic003G199800 Sobic001G111700--Sobic009G222200 Sobic001G111700--Sobic003G036100 Sobic001G111700--Sobic004G353700 Sobic008G108400 Sobic008G108400 Sobic001G111700--Sobic008G108400
Octagon: transcription factors


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