Gene annotation
Transcriptome id Sobic.001G189100.1
Synonym Sb01g016610
Functional annotation coatomer subunit beta-1, putative, expressed
UniProt C5WV86
Pfam -
Panther DB PTHR10635
NCBI CDD -
KEGG Orthology K17301; COPB1, coatomer subunit beta
Gene Ontology GO:0006886; intracellular protein transport GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT4G31490 : Coatomer, beta subunit
RAP-DB (Rice) LOC_Os01g17430.1 : coatomer subunit beta-1, putative, expressed
MaizeGDB (Corn) Zm00025a055437
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
2 Sobic.003G237600 expressed protein -
3 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
4 Sobic.003G036100 - -
5 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
7 Sobic.009G222200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
8 Sobic.004G035700 - -
9 Sobic.008G106200 cytochrome P450, putative, expressed -
10 Sobic.004G095000 zinc knuckle family protein, expressed K03257: translation initiation factor 4A
11 Sobic.007G189700 - -
12 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
13 Sobic.010G030800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
14 Sobic.002G213000 - -
15 Sobic.001G068400 - -
16 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
17 Sobic.010G038500 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.003G326400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G006700 - -
20 Sobic.002G195100 - -


Gene co-expression network
sample Sobic001G189100 Sobic001G189100 Sobic001G189100--Sobic001G189100 Sobic003G237600 Sobic003G237600 Sobic001G189100--Sobic003G237600 Sobic009G254600 Sobic009G254600 Sobic001G189100--Sobic009G254600 Sobic003G036100 Sobic003G036100 Sobic001G189100--Sobic003G036100 Sobic001G355600 Sobic001G355600 Sobic001G189100--Sobic001G355600 Sobic010G183100 Sobic010G183100 Sobic001G189100--Sobic010G183100 Sobic009G222200 Sobic009G222200 Sobic001G189100--Sobic009G222200 Sobic004G035700 Sobic004G035700 Sobic001G189100--Sobic004G035700 Sobic008G106200 Sobic008G106200 Sobic001G189100--Sobic008G106200 Sobic003G237600--Sobic001G189100 Sobic003G237600--Sobic001G355600 Sobic003G237600--Sobic003G036100 Sobic003G237600--Sobic009G254600 Sobic003G237600--Sobic009G222200 Sobic003G237600--Sobic010G183100 Sobic003G237600--Sobic004G035700 Sobic003G237600--Sobic008G106200 Sobic010G038500 Sobic010G038500 Sobic009G254600--Sobic010G038500 Sobic008G081200 Sobic008G081200 Sobic009G254600--Sobic008G081200 Sobic009G254600--Sobic001G189100 Sobic009G254600--Sobic004G035700 Sobic009G254600--Sobic003G237600 Sobic009G254600--Sobic010G183100 Sobic001G068400 Sobic001G068400 Sobic009G254600--Sobic001G068400 Sobic007G189700 Sobic007G189700 Sobic009G254600--Sobic007G189700 Sobic003G036100--Sobic001G189100 Sobic003G036100--Sobic003G237600 Sobic004G353700 Sobic004G353700 Sobic003G036100--Sobic004G353700 Sobic003G036100--Sobic007G189700 Sobic010G030800 Sobic010G030800 Sobic003G036100--Sobic010G030800 Sobic003G036100--Sobic009G222200 Sobic003G036100--Sobic009G254600 Sobic001G111700 Sobic001G111700 Sobic003G036100--Sobic001G111700 Sobic001G355600--Sobic001G189100 Sobic001G355600--Sobic003G237600 Sobic001G355600--Sobic009G222200 Sobic003G371100 Sobic003G371100 Sobic001G355600--Sobic003G371100 Sobic001G355600--Sobic003G036100 Sobic001G355600--Sobic010G183100 Sobic001G355600--Sobic008G106200 Sobic001G355600--Sobic009G254600 Sobic010G183100--Sobic004G035700 Sobic010G183100--Sobic007G189700 Sobic010G183100--Sobic008G081200 Sobic010G183100--Sobic001G068400 Sobic003G199800 Sobic003G199800 Sobic010G183100--Sobic003G199800 Sobic010G183100--Sobic010G038500 Sobic002G040100 Sobic002G040100 Sobic010G183100--Sobic002G040100 Sobic010G183100--Sobic009G254600 Sobic010G183100--Sobic009G222200 Sobic009G222200--Sobic010G183100 Sobic009G222200--Sobic003G237600 Sobic009G222200--Sobic001G189100 Sobic009G222200--Sobic010G030800 Sobic009G222200--Sobic001G355600 Sobic009G222200--Sobic007G189700 Sobic009G222200--Sobic003G036100 Sobic009G222200--Sobic004G035700 Sobic004G035700--Sobic010G183100 Sobic004G035700--Sobic007G189700 Sobic004G035700--Sobic001G068400 Sobic010G183032 Sobic010G183032 Sobic004G035700--Sobic010G183032 Sobic010G108401 Sobic010G108401 Sobic004G035700--Sobic010G108401 Sobic004G035700--Sobic009G254600 Sobic004G035700--Sobic010G038500 Sobic004G035700--Sobic002G040100 Sobic001G297400 Sobic001G297400 Sobic004G035700--Sobic001G297400 Sobic008G106200--Sobic001G189100 Sobic008G106200--Sobic003G237600 Sobic008G106200--Sobic009G254600 Sobic008G106200--Sobic001G355600 Sobic008G106200--Sobic003G036100 Sobic008G106200--Sobic004G035700 Sobic008G106200--Sobic010G183100 Sobic008G106200--Sobic001G068400
Octagon: transcription factors


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