Gene annotation
Transcriptome id Sobic.009G222200.1,Sobic.009G222200.2
Synonym Sb09g027620, BTS, EMB2454
Functional annotation E3 ubiquitin ligase, putative, expressed
UniProt A0A1B6P9Y3 , A0A1B6P9Q9
Pfam PF05495 PF14599 PF01814 PF01814 PF05495 PF14599
Panther DB PTHR21319 PTHR21319:SF10
NCBI CDD KOG1940; Zn-finger protein
KEGG Orthology K16276; K16276, zinc finger protein-like protein
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G18290 : zinc finger protein-related
RAP-DB (Rice) LOC_Os01g49470.1 : E3 ubiquitin ligase, putative, expressed
MaizeGDB (Corn) Zm00025a038856 , Zm00025a044468 , Zm00025a027973
Brachypodium KQK09252 , KQK05031
Barley HORVU3Hr1G064080.3 , HORVU3Hr1G064080.2 , HORVU3Hr1G064080.1 , HORVU3Hr1G064080.6 , HORVU3Hr1G064080.5 , HORVU3Hr1G064080.4
Wheat TraesCS3A02G143800 , TraesCS3A02G143800 , TraesCS1D02G382000 , TraesCS1D02G382000 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS3D02G262600 , TraesCS1A02G374800 , TraesCS1A02G374800 , TraesCS1A02G374800 , TraesCS3A02G262700 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS1B02G395000 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3B02G296100 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3D02G262600 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700 , TraesCS3A02G262700
Populus PNT16122 , PNT16123 , PNT16120 , PNT16121 , PNT16126 , PNT16124 , PNT16125


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
2 Sobic.003G237600 expressed protein -
3 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
4 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
5 Sobic.010G030800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
6 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.007G189700 - -
8 Sobic.003G036100 - -
9 Sobic.004G035700 - -
10 Sobic.001G111700 alpha/beta-Hydrolases superfamily protein(PubMedID : 26465154)@alpha/beta-Hydrolases superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
11 Sobic.004G353700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
14 Sobic.002G213000 - -
15 Sobic.004G026300 heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
16 Sobic.005G202600 tropinone reductase 2, putative, expressed -
17 Sobic.003G235500 expressed protein -
18 Sobic.001G068400 - -
19 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
20 Sobic.003G371100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@POT family protein, expressed -


Gene co-expression network
sample Sobic009G222200 Sobic009G222200 Sobic010G183100 Sobic010G183100 Sobic009G222200--Sobic010G183100 Sobic003G237600 Sobic003G237600 Sobic009G222200--Sobic003G237600 Sobic001G189100 Sobic001G189100 Sobic009G222200--Sobic001G189100 Sobic010G030800 Sobic010G030800 Sobic009G222200--Sobic010G030800 Sobic001G355600 Sobic001G355600 Sobic009G222200--Sobic001G355600 Sobic007G189700 Sobic007G189700 Sobic009G222200--Sobic007G189700 Sobic003G036100 Sobic003G036100 Sobic009G222200--Sobic003G036100 Sobic004G035700 Sobic004G035700 Sobic009G222200--Sobic004G035700 Sobic010G183100--Sobic004G035700 Sobic010G183100--Sobic007G189700 Sobic008G081200 Sobic008G081200 Sobic010G183100--Sobic008G081200 Sobic001G068400 Sobic001G068400 Sobic010G183100--Sobic001G068400 Sobic003G199800 Sobic003G199800 Sobic010G183100--Sobic003G199800 Sobic010G038500 Sobic010G038500 Sobic010G183100--Sobic010G038500 Sobic002G040100 Sobic002G040100 Sobic010G183100--Sobic002G040100 Sobic009G254600 Sobic009G254600 Sobic010G183100--Sobic009G254600 Sobic010G183100--Sobic009G222200 Sobic003G237600--Sobic001G189100 Sobic003G237600--Sobic001G355600 Sobic003G237600--Sobic003G036100 Sobic003G237600--Sobic009G254600 Sobic003G237600--Sobic009G222200 Sobic003G237600--Sobic010G183100 Sobic003G237600--Sobic004G035700 Sobic008G106200 Sobic008G106200 Sobic003G237600--Sobic008G106200 Sobic001G189100--Sobic001G189100 Sobic001G189100--Sobic003G237600 Sobic001G189100--Sobic009G254600 Sobic001G189100--Sobic003G036100 Sobic001G189100--Sobic001G355600 Sobic001G189100--Sobic010G183100 Sobic001G189100--Sobic009G222200 Sobic001G189100--Sobic004G035700 Sobic001G189100--Sobic008G106200 Sobic010G030800--Sobic007G189700 Sobic010G030800--Sobic009G222200 Sobic010G030800--Sobic010G183100 Sobic005G202600 Sobic005G202600 Sobic010G030800--Sobic005G202600 Sobic003G235500 Sobic003G235500 Sobic010G030800--Sobic003G235500 Sobic004G353700 Sobic004G353700 Sobic010G030800--Sobic004G353700 Sobic010G030800--Sobic003G036100 Sobic010G030800--Sobic001G189100 Sobic001G355600--Sobic001G189100 Sobic001G355600--Sobic003G237600 Sobic001G355600--Sobic009G222200 Sobic003G371100 Sobic003G371100 Sobic001G355600--Sobic003G371100 Sobic001G355600--Sobic003G036100 Sobic001G355600--Sobic010G183100 Sobic001G355600--Sobic008G106200 Sobic001G355600--Sobic009G254600 Sobic007G189700--Sobic010G183100 Sobic007G189700--Sobic004G035700 Sobic007G189700--Sobic010G030800 Sobic007G189700--Sobic003G199800 Sobic007G189700--Sobic008G081200 Sobic007G189700--Sobic009G222200 Sobic007G189700--Sobic009G254600 Sobic007G189700--Sobic002G040100 Sobic001G406000 Sobic001G406000 Sobic007G189700--Sobic001G406000 Sobic003G036100--Sobic001G189100 Sobic003G036100--Sobic003G237600 Sobic003G036100--Sobic004G353700 Sobic003G036100--Sobic007G189700 Sobic003G036100--Sobic010G030800 Sobic003G036100--Sobic009G222200 Sobic003G036100--Sobic009G254600 Sobic001G111700 Sobic001G111700 Sobic003G036100--Sobic001G111700 Sobic004G035700--Sobic010G183100 Sobic004G035700--Sobic007G189700 Sobic004G035700--Sobic001G068400 Sobic010G183032 Sobic010G183032 Sobic004G035700--Sobic010G183032 Sobic010G108401 Sobic010G108401 Sobic004G035700--Sobic010G108401 Sobic004G035700--Sobic009G254600 Sobic004G035700--Sobic010G038500 Sobic004G035700--Sobic002G040100 Sobic001G297400 Sobic001G297400 Sobic004G035700--Sobic001G297400
Octagon: transcription factors


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