Gene annotation
Transcriptome id Sobic.003G371100.1
Synonym Sb03g041200
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
POT family protein, expressed
UniProt C5XR96
Pfam PF07690
Panther DB PTHR11654 PTHR11654:SF108
NCBI CDD KOG1237; H+/oligopeptide symporter
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT1G22540 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os01g65110.1 : POT family protein, expressed
MaizeGDB (Corn) Zm00025a043865 , Zm00025a037322 , Zm00025a043863 , Zm00025a026649 , Zm00025a005044 , Zm00025a039549
Brachypodium KQK06085 , KQK06084 , KQK10814 , KQJ84687 , KQK10813 , PNT73273 , KQK10815
Barley HORVU3Hr1G082460.1 , HORVU3Hr1G082460.3 , HORVU3Hr1G082460.2 , HORVU3Hr1G082460.5 , HORVU3Hr1G082460.4 , HORVU3Hr1G082460.7 , HORVU3Hr1G082460.6 , HORVU3Hr1G082460.9 , HORVU3Hr1G082460.8 , HORVU3Hr1G082580.10 , HORVU3Hr1G082580.11 , HORVU3Hr1G082580.12 , HORVU3Hr1G082580.13 , HORVU3Hr1G082580.8 , HORVU3Hr1G082580.9 , HORVU3Hr1G082580.2 , HORVU3Hr1G082580.3 , HORVU3Hr1G082580.1 , HORVU3Hr1G082580.6 , HORVU3Hr1G082580.7 , HORVU3Hr1G082580.4 , HORVU3Hr1G082580.5 , HORVU1Hr1G074550.6 , HORVU1Hr1G074550.7 , HORVU1Hr1G074550.4 , HORVU1Hr1G074550.5 , HORVU1Hr1G074550.2 , HORVU1Hr1G074550.3 , HORVU1Hr1G074550.1 , HORVU1Hr1G074550.8 , HORVU1Hr1G074550.9 , HORVU3Hr1G082460.10 , HORVU2Hr1G125130.2 , HORVU2Hr1G060870.1 , HORVU2Hr1G125130.1
Wheat TraesCS3A02G382200 , TraesCS3A02G382200 , TraesCS2D02G576000 , TraesCS4B02G057000 , TraesCS7B02G040100 , TraesCS2B02G615200 , TraesCS2A02G565600 , TraesCS2A02G565600 , TraesCS2D02G583500 , TraesCS2A02G572200 , TraesCS1A02G269600 , TraesCS3B02G414800 , TraesCS2B02G626100 , TraesCS7D02G139600 , TraesCS3D02G375900 , TraesCS3B02G414900 , TraesCS2A02G571900 , TraesCS1B02G280100 , TraesCS3B02G415200 , TraesCS3D02G375800 , TraesCS2B02G626600 , TraesCS2D02G583400 , TraesCS2B02G248000 , TraesCS3B02G414800 , TraesCS2B02G626000 , TraesCS3B02G304500 , TraesCS2D02G576000 , TraesCS3A02G382100 , TraesCS1D02G269700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G371100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G355600 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.007G226200 - -
3 Sobic.002G213000 - -
4 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
5 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
6 Sobic.003G237600 expressed protein -
7 Sobic.003G326400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.009G222200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
9 Sobic.003G344700 ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
10 Sobic.001G301600 expansin precursor, putative, expressed -
11 Sobic.006G030001 - -
12 Sobic.003G036100 - -
13 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
14 Sobic.004G095000 zinc knuckle family protein, expressed K03257: translation initiation factor 4A
15 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
16 Sobic.004G035700 - -
17 Sobic.008G106200 cytochrome P450, putative, expressed -
18 Sobic.007G189700 - -
19 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
20 Sobic.010G030800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic003G371100 Sobic003G371100 Sobic001G355600 Sobic001G355600 Sobic003G371100--Sobic001G355600 Sobic007G226200 Sobic007G226200 Sobic003G371100--Sobic007G226200 Sobic002G213000 Sobic002G213000 Sobic003G371100--Sobic002G213000 Sobic001G189100 Sobic001G189100 Sobic003G371100--Sobic001G189100 Sobic003G237600 Sobic003G237600 Sobic003G371100--Sobic003G237600 Sobic003G326400 Sobic003G326400 Sobic003G371100--Sobic003G326400 Sobic009G222200 Sobic009G222200 Sobic003G371100--Sobic009G222200 Sobic003G344700 Sobic003G344700 Sobic003G371100--Sobic003G344700 Sobic001G355600--Sobic001G189100 Sobic001G355600--Sobic003G237600 Sobic001G355600--Sobic009G222200 Sobic001G355600--Sobic003G371100 Sobic003G036100 Sobic003G036100 Sobic001G355600--Sobic003G036100 Sobic010G183100 Sobic010G183100 Sobic001G355600--Sobic010G183100 Sobic008G106200 Sobic008G106200 Sobic001G355600--Sobic008G106200 Sobic009G254600 Sobic009G254600 Sobic001G355600--Sobic009G254600 Sobic007G226200--Sobic003G371100 Sobic002G195100 Sobic002G195100 Sobic007G226200--Sobic002G195100 Sobic005G065500 Sobic005G065500 Sobic007G226200--Sobic005G065500 Sobic001G098600 Sobic001G098600 Sobic007G226200--Sobic001G098600 Sobic006G006700 Sobic006G006700 Sobic007G226200--Sobic006G006700 Sobic007G226200--Sobic002G213000 Sobic010G157000 Sobic010G157000 Sobic007G226200--Sobic010G157000 Sobic007G226200--Sobic003G237600 Sobic007G226200--Sobic001G189100 Sobic004G035700 Sobic004G035700 Sobic002G213000--Sobic004G035700 Sobic002G213000--Sobic010G183100 Sobic001G068400 Sobic001G068400 Sobic002G213000--Sobic001G068400 Sobic001G297400 Sobic001G297400 Sobic002G213000--Sobic001G297400 Sobic002G213000--Sobic009G254600 Sobic002G213000--Sobic001G189100 Sobic002G213000--Sobic003G237600 Sobic008G081200 Sobic008G081200 Sobic002G213000--Sobic008G081200 Sobic001G189100--Sobic001G189100 Sobic001G189100--Sobic003G237600 Sobic001G189100--Sobic009G254600 Sobic001G189100--Sobic003G036100 Sobic001G189100--Sobic001G355600 Sobic001G189100--Sobic010G183100 Sobic001G189100--Sobic009G222200 Sobic001G189100--Sobic004G035700 Sobic001G189100--Sobic008G106200 Sobic003G237600--Sobic001G189100 Sobic003G237600--Sobic001G355600 Sobic003G237600--Sobic003G036100 Sobic003G237600--Sobic009G254600 Sobic003G237600--Sobic009G222200 Sobic003G237600--Sobic010G183100 Sobic003G237600--Sobic004G035700 Sobic003G237600--Sobic008G106200 Sobic003G326400--Sobic003G237600 Sobic003G326400--Sobic001G189100 Sobic003G326400--Sobic001G355600 Sobic003G326400--Sobic003G371100 Sobic003G326400--Sobic002G213000 Sobic003G326400--Sobic009G254600 Sobic003G326400--Sobic003G036100 Sobic003G326400--Sobic004G035700 Sobic009G222200--Sobic010G183100 Sobic009G222200--Sobic003G237600 Sobic009G222200--Sobic001G189100 Sobic010G030800 Sobic010G030800 Sobic009G222200--Sobic010G030800 Sobic009G222200--Sobic001G355600 Sobic007G189700 Sobic007G189700 Sobic009G222200--Sobic007G189700 Sobic009G222200--Sobic003G036100 Sobic009G222200--Sobic004G035700 Sobic003G344700--Sobic002G213000 Sobic001G301600 Sobic001G301600 Sobic003G344700--Sobic001G301600 Sobic003G344700--Sobic001G098600 Sobic003G344700--Sobic003G371100 Sobic003G344700--Sobic001G355600 Sobic003G344700--Sobic004G035700 Sobic003G344700--Sobic007G226200 Sobic001G338500 Sobic001G338500 Sobic003G344700--Sobic001G338500 Sobic003G344700--Sobic001G297400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.