Gene annotation
Transcriptome id Sobic.010G030800.1
Synonym Sb10g002790
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
zinc finger family protein, putative, expressed
UniProt C5Z3T1
Pfam PF00641
Panther DB PTHR23111 PTHR23111:SF38
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G15680 : Ran BP2/NZF zinc finger-like superfamily protein
RAP-DB (Rice) LOC_Os06g04920.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a050079
Brachypodium KQK19889 , KQK19888 , KQK19891 , KQK19887 , KQK19886 , PNT76656 , PNT76655 , KQK19890 , KQK19892
Barley -
Wheat TraesCS7A02G094000 , TraesCS7D02G089400 , TraesCS4A02G394400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G189700 - -
2 Sobic.009G222200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
3 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
4 Sobic.005G202600 tropinone reductase 2, putative, expressed -
5 Sobic.003G235500 expressed protein -
6 Sobic.004G353700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G036100 - -
8 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
9 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
10 Sobic.004G035700 - -
11 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
12 Sobic.003G237600 expressed protein -
13 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
14 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.008G104601 - -
16 Sobic.001G406000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.13 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.001G520800 expressed protein -
18 Sobic.003G199800 expressed protein -
19 Sobic.010G038500 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.002G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@beta-amylase, putative, expressed -


Gene co-expression network
sample Sobic010G030800 Sobic010G030800 Sobic007G189700 Sobic007G189700 Sobic010G030800--Sobic007G189700 Sobic009G222200 Sobic009G222200 Sobic010G030800--Sobic009G222200 Sobic010G183100 Sobic010G183100 Sobic010G030800--Sobic010G183100 Sobic005G202600 Sobic005G202600 Sobic010G030800--Sobic005G202600 Sobic003G235500 Sobic003G235500 Sobic010G030800--Sobic003G235500 Sobic004G353700 Sobic004G353700 Sobic010G030800--Sobic004G353700 Sobic003G036100 Sobic003G036100 Sobic010G030800--Sobic003G036100 Sobic001G189100 Sobic001G189100 Sobic010G030800--Sobic001G189100 Sobic007G189700--Sobic010G183100 Sobic004G035700 Sobic004G035700 Sobic007G189700--Sobic004G035700 Sobic007G189700--Sobic010G030800 Sobic003G199800 Sobic003G199800 Sobic007G189700--Sobic003G199800 Sobic008G081200 Sobic008G081200 Sobic007G189700--Sobic008G081200 Sobic007G189700--Sobic009G222200 Sobic009G254600 Sobic009G254600 Sobic007G189700--Sobic009G254600 Sobic002G040100 Sobic002G040100 Sobic007G189700--Sobic002G040100 Sobic001G406000 Sobic001G406000 Sobic007G189700--Sobic001G406000 Sobic009G222200--Sobic010G183100 Sobic003G237600 Sobic003G237600 Sobic009G222200--Sobic003G237600 Sobic009G222200--Sobic001G189100 Sobic009G222200--Sobic010G030800 Sobic001G355600 Sobic001G355600 Sobic009G222200--Sobic001G355600 Sobic009G222200--Sobic007G189700 Sobic009G222200--Sobic003G036100 Sobic009G222200--Sobic004G035700 Sobic010G183100--Sobic004G035700 Sobic010G183100--Sobic007G189700 Sobic010G183100--Sobic008G081200 Sobic001G068400 Sobic001G068400 Sobic010G183100--Sobic001G068400 Sobic010G183100--Sobic003G199800 Sobic010G038500 Sobic010G038500 Sobic010G183100--Sobic010G038500 Sobic010G183100--Sobic002G040100 Sobic010G183100--Sobic009G254600 Sobic010G183100--Sobic009G222200 Sobic005G202600--Sobic010G030800 Sobic005G202600--Sobic003G036100 Sobic005G202600--Sobic007G189700 Sobic005G202600--Sobic004G353700 Sobic001G111700 Sobic001G111700 Sobic005G202600--Sobic001G111700 Sobic002G329400 Sobic002G329400 Sobic005G202600--Sobic002G329400 Sobic005G202600--Sobic009G222200 Sobic005G202600--Sobic001G189100 Sobic003G235500--Sobic010G030800 Sobic003G231800 Sobic003G231800 Sobic003G235500--Sobic003G231800 Sobic003G235500--Sobic007G189700 Sobic003G235500--Sobic010G183100 Sobic003G235500--Sobic003G036100 Sobic003G235500--Sobic009G254600 Sobic003G235500--Sobic001G189100 Sobic003G235500--Sobic001G406000 Sobic003G234400 Sobic003G234400 Sobic004G353700--Sobic003G234400 Sobic004G353700--Sobic003G036100 Sobic004G353700--Sobic007G189700 Sobic004G353700--Sobic010G030800 Sobic004G353700--Sobic001G406000 Sobic004G353700--Sobic009G222200 Sobic002G214300 Sobic002G214300 Sobic004G353700--Sobic002G214300 Sobic004G353700--Sobic005G202600 Sobic004G353700--Sobic001G111700 Sobic003G036100--Sobic001G189100 Sobic003G036100--Sobic003G237600 Sobic003G036100--Sobic004G353700 Sobic003G036100--Sobic007G189700 Sobic003G036100--Sobic010G030800 Sobic003G036100--Sobic009G222200 Sobic003G036100--Sobic009G254600 Sobic003G036100--Sobic001G111700 Sobic001G189100--Sobic001G189100 Sobic001G189100--Sobic003G237600 Sobic001G189100--Sobic009G254600 Sobic001G189100--Sobic003G036100 Sobic001G189100--Sobic001G355600 Sobic001G189100--Sobic010G183100 Sobic001G189100--Sobic009G222200 Sobic001G189100--Sobic004G035700 Sobic008G106200 Sobic008G106200 Sobic001G189100--Sobic008G106200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.