Gene annotation
| Transcriptome id | Sobic.002G329400.1 |
|---|---|
| Synonym | AT-BETA-AMY, BAM5, BMY1, ATBETA-AMY, Sb02g035590, RAM1 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) beta-amylase, putative, expressed |
| UniProt | C5XAT3 |
| Pfam | PF01373 |
| Panther DB | PTHR31352 PTHR31352:SF5 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016161; beta-amylase activity GO:0000272polysaccharide catabolic process |
Orthologs (automatic annotation)
| TAIR | AT4G15210 : beta-amylase 5 |
|---|---|
| RAP-DB (Rice) | LOC_Os07g35880.1 : beta-amylase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a014852 |
| Brachypodium | KQK15874 |
| Barley | HORVU4Hr1G089510.9 , HORVU4Hr1G089510.8 , HORVU4Hr1G089510.7 , HORVU4Hr1G089510.6 , HORVU4Hr1G089510.5 , HORVU4Hr1G089510.4 , HORVU4Hr1G089510.3 , HORVU4Hr1G089510.2 , HORVU4Hr1G089510.1 |
| Wheat | TraesCS2B02G240200 , TraesCS2B02G240200 , TraesCS2B02G240200 , TraesCS2B02G240100 , TraesCS2B02G240100 , TraesCS2D02G221000 , TraesCS2A02G215100 , TraesCS2A02G215100 , TraesCS2A02G215300 |
| Populus | PNS95156 , PNS95155 , PNS95154 , PNS95153 , PNS95152 , PNS95151 |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G234400 | CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed | K01673: cynT, carbonic anhydrase |
| 2 | Sobic.005G202600 | tropinone reductase 2, putative, expressed | - |
| 3 | Sobic.003G036100 | - | - |
| 4 | Sobic.010G030800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed | - |
| 5 | Sobic.001G344400 | 3-oxoacyl-synthase, putative, expressed | K09458: fabF, OXSM, 3-oxoacyl-[acyl-carrier-protein] synthase II |
| 6 | Sobic.004G353700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 7 | Sobic.010G095000 | kinase, pfkB family, putative, expressed | K00847: E2.7.1.4, fructokinase |
| 8 | Sobic.004G026300 | heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 9 | Sobic.001G076900 | Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed | - |
| 10 | Sobic.007G005850 | - | - |
| 11 | Sobic.008G061401 | - | - |
| 12 | Sobic.003G231800 | down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed | - |
| 13 | Sobic.006G090400 | OsRR1 type-A response regulator, expressed | K14492: two-component response regulator ARR-A family |
| 14 | Sobic.006G008700 | bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed | K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase |
| 15 | Sobic.007G189700 | - | - |
| 16 | Sobic.003G199800 | expressed protein | - |
| 17 | Sobic.003G235500 | expressed protein | - |
| 18 | Sobic.005G039600 | -(PubMedID : 26465154)@expressed protein | - |
| 19 | Sobic.009G222200 | E3 ubiquitin ligase, putative, expressed | K16276: K16276, zinc finger protein-like protein |
| 20 | Sobic.005G056400 | Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
Gene co-expression network
Octagon: transcription factors
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