Gene annotation
Transcriptome id Sobic.005G039600.2,Sobic.005G039600.1
Synonym Sb05g003300
Functional annotation - (PubMedID : 26465154)
expressed protein
UniProt A0A1B6PQ18
Pfam PF11250
Panther DB PTHR33155 PTHR33155:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G22390 : Protein of unknown function (DUF3049)
RAP-DB (Rice) LOC_Os11g05550.1 : expressed protein
MaizeGDB (Corn) Zm00025a012999
Brachypodium KQJ92206
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G039600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G520800 expressed protein -
2 Sobic.007G034300 expressed protein -
3 Sobic.003G199800 expressed protein -
4 Sobic.003G310400 polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
5 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
6 Sobic.003G431900 -(PubMedID : 26976818)@expressed protein K07562: nonsense-mediated mRNA decay protein 3
7 Sobic.009G244300 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
8 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
9 Sobic.005G030500 OsRR10 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
10 Sobic.003G234400 CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
11 Sobic.004G283100 -(PubMedID : 26465154)@expressed protein -
12 Sobic.005G165500 OsSub17 - Putative Subtilisin homologue, expressed -
13 Sobic.004G305800 expressed protein -
14 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
15 Sobic.003G303700 Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein -
16 Sobic.007G189700 - -
17 Sobic.008G021300 Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed -
18 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
19 Sobic.008G104601 - -
20 Sobic.010G201700 GA16396-PA, putative, expressed -


Gene co-expression network
sample Sobic005G039600 Sobic005G039600 Sobic001G520800 Sobic001G520800 Sobic005G039600--Sobic001G520800 Sobic007G034300 Sobic007G034300 Sobic005G039600--Sobic007G034300 Sobic003G199800 Sobic003G199800 Sobic005G039600--Sobic003G199800 Sobic003G310400 Sobic003G310400 Sobic005G039600--Sobic003G310400 Sobic003G231800 Sobic003G231800 Sobic005G039600--Sobic003G231800 Sobic003G431900 Sobic003G431900 Sobic005G039600--Sobic003G431900 Sobic009G244300 Sobic009G244300 Sobic005G039600--Sobic009G244300 Sobic004G035500 Sobic004G035500 Sobic005G039600--Sobic004G035500 Sobic005G030500 Sobic005G030500 Sobic005G039600--Sobic005G030500 Sobic001G520800--Sobic007G034300 Sobic001G520800--Sobic005G039600 Sobic001G520800--Sobic003G199800 Sobic008G104601 Sobic008G104601 Sobic001G520800--Sobic008G104601 Sobic001G520800--Sobic003G231800 Sobic002G233300 Sobic002G233300 Sobic001G520800--Sobic002G233300 Sobic001G520800--Sobic009G244300 Sobic007G189700 Sobic007G189700 Sobic001G520800--Sobic007G189700 Sobic001G520800--Sobic003G431900 Sobic007G034300--Sobic001G520800 Sobic005G165500 Sobic005G165500 Sobic007G034300--Sobic005G165500 Sobic007G034300--Sobic009G244300 Sobic008G053200 Sobic008G053200 Sobic007G034300--Sobic008G053200 Sobic004G283100 Sobic004G283100 Sobic007G034300--Sobic004G283100 Sobic007G034300--Sobic008G104601 Sobic007G034300--Sobic002G233300 Sobic007G034300--Sobic003G231800 Sobic004G305800 Sobic004G305800 Sobic007G034300--Sobic004G305800 Sobic002G040100 Sobic002G040100 Sobic003G199800--Sobic002G040100 Sobic010G276400 Sobic010G276400 Sobic003G199800--Sobic010G276400 Sobic002G000500 Sobic002G000500 Sobic003G199800--Sobic002G000500 Sobic010G183100 Sobic010G183100 Sobic003G199800--Sobic010G183100 Sobic003G199800--Sobic004G035500 Sobic008G038300 Sobic008G038300 Sobic003G199800--Sobic008G038300 Sobic010G109500 Sobic010G109500 Sobic003G199800--Sobic010G109500 Sobic003G199800--Sobic007G189700 Sobic009G191300 Sobic009G191300 Sobic003G199800--Sobic009G191300 Sobic001G198800 Sobic001G198800 Sobic003G310400--Sobic001G198800 Sobic002G152700 Sobic002G152700 Sobic003G310400--Sobic002G152700 Sobic008G021300 Sobic008G021300 Sobic003G310400--Sobic008G021300 Sobic002G033800 Sobic002G033800 Sobic003G310400--Sobic002G033800 Sobic003G310400--Sobic003G199800 Sobic004G023200 Sobic004G023200 Sobic003G310400--Sobic004G023200 Sobic003G310400--Sobic010G276400 Sobic003G310400--Sobic001G520800 Sobic001G448400 Sobic001G448400 Sobic003G310400--Sobic001G448400 Sobic003G231800--Sobic009G244300 Sobic009G244600 Sobic009G244600 Sobic003G231800--Sobic009G244600 Sobic004G267000 Sobic004G267000 Sobic003G231800--Sobic004G267000 Sobic003G231800--Sobic010G183100 Sobic003G231800--Sobic007G034300 Sobic003G231800--Sobic001G520800 Sobic006G006700 Sobic006G006700 Sobic003G231800--Sobic006G006700 Sobic009G254600 Sobic009G254600 Sobic003G231800--Sobic009G254600 Sobic003G235500 Sobic003G235500 Sobic003G231800--Sobic003G235500 Sobic003G431900--Sobic008G053200 Sobic003G234200 Sobic003G234200 Sobic003G431900--Sobic003G234200 Sobic003G431900--Sobic004G305800 Sobic003G256700 Sobic003G256700 Sobic003G431900--Sobic003G256700 Sobic001G519800 Sobic001G519800 Sobic003G431900--Sobic001G519800 Sobic003G431900--Sobic005G165500 Sobic002G324500 Sobic002G324500 Sobic003G431900--Sobic002G324500 Sobic004G308700 Sobic004G308700 Sobic003G431900--Sobic004G308700 Sobic004G272100 Sobic004G272100 Sobic003G431900--Sobic004G272100 Sobic009G244300--Sobic003G231800 Sobic009G244300--Sobic004G267000 Sobic009G244300--Sobic009G244600 Sobic009G244300--Sobic007G034300 Sobic003G241900 Sobic003G241900 Sobic009G244300--Sobic003G241900 Sobic009G244300--Sobic001G520800 Sobic009G244300--Sobic004G305800 Sobic009G244300--Sobic008G104601 Sobic009G244300--Sobic003G199800 Sobic003G359100 Sobic003G359100 Sobic004G035500--Sobic003G359100 Sobic008G134800 Sobic008G134800 Sobic004G035500--Sobic008G134800 Sobic007G071500 Sobic007G071500 Sobic004G035500--Sobic007G071500 Sobic004G249800 Sobic004G249800 Sobic004G035500--Sobic004G249800 Sobic008G066100 Sobic008G066100 Sobic004G035500--Sobic008G066100 Sobic004G035500--Sobic008G021300 Sobic007G207800 Sobic007G207800 Sobic004G035500--Sobic007G207800 Sobic004G035500--Sobic004G272100 Sobic006G105900 Sobic006G105900 Sobic004G035500--Sobic006G105900 Sobic005G030500--Sobic005G039600 Sobic003G237600 Sobic003G237600 Sobic005G030500--Sobic003G237600 Sobic008G081200 Sobic008G081200 Sobic005G030500--Sobic008G081200 Sobic002G213000 Sobic002G213000 Sobic005G030500--Sobic002G213000 Sobic005G030500--Sobic007G189700 Sobic001G189100 Sobic001G189100 Sobic005G030500--Sobic001G189100 Sobic005G030500--Sobic009G254600 Sobic003G036100 Sobic003G036100 Sobic005G030500--Sobic003G036100
Octagon: transcription factors


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