Gene annotation
| Transcriptome id | Sobic.003G310400.1,Sobic.003G310400.2 |
|---|---|
| Synonym | Sb03g035850 |
| Functional annotation | polyphenol oxidase, putative, expressed |
| UniProt | A0A1B6Q6C0 , A0A1W0VZT6 |
| Pfam | PF12142 PF00264 PF12143 |
| Panther DB | PTHR11474 PTHR11474:SF35 |
| NCBI CDD | - |
| KEGG Orthology | K00422; polyphenol oxidase |
| Gene Ontology | GO:0004097; catechol oxidase activity GO:0016491oxidoreductase activity GO:0008152metabolic process |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os01g58100.1 : polyphenol oxidase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a051548 |
| Brachypodium | KQK10121 , PNT73025 , KQK10142 |
| Barley | HORVU4Hr1G090870.1 , HORVU2Hr1G103000.6 , HORVU2Hr1G103000.7 , HORVU2Hr1G103000.4 , HORVU2Hr1G103000.5 , HORVU2Hr1G103000.2 , HORVU2Hr1G103000.3 , HORVU2Hr1G103000.1 , HORVU3Hr1G077790.1 , HORVU2Hr1G103000.8 , HORVU2Hr1G103000.9 , HORVU0Hr1G007090.1 , HORVU2Hr1G103040.2 , HORVU2Hr1G103040.3 , HORVU2Hr1G103040.1 , HORVU2Hr1G103040.4 , HORVU2Hr1G103040.5 , HORVU5Hr1G041740.2 , HORVU5Hr1G041740.1 |
| Wheat | TraesCS5A02G549200 , TraesCS3B02G568600 , TraesCS4D02G358500 , TraesCS4B02G385600 , TraesCS2A02G468500 , TraesCS2B02G491400 , TraesCS4D02G359200 , TraesCS2B02G491000 , TraesCS2D02G468600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G198800 | -(PubMedID : 26465154)@invertase/pectin methylesterase inhibitor family protein, putative, expressed | - |
| 2 | Sobic.002G152700 | rhodanese-like, putative, expressed | - |
| 3 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 4 | Sobic.002G033800 | expressed protein | - |
| 5 | Sobic.003G199800 | expressed protein | - |
| 6 | Sobic.004G023200 | Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed | - |
| 7 | Sobic.010G276400 | "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed | K02291: 15-cis-phytoene synthase |
| 8 | Sobic.001G520800 | expressed protein | - |
| 9 | Sobic.001G448400 | UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed | - |
| 10 | Sobic.004G182700 | OsFBK8 - F-box domain and kelch repeat containing protein, expressed | - |
| 11 | Sobic.003G146700 | heavy metal-associated domain containing protein, expressed | - |
| 12 | Sobic.003G131000 | expressed protein | - |
| 13 | Sobic.001G338700 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 14 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 15 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 16 | Sobic.002G040100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- | - |
| 17 | Sobic.007G212400 | thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed | - |
| 18 | Sobic.005G039600 | -(PubMedID : 26465154)@expressed protein | - |
| 19 | Sobic.010G109500 | expressed protein | - |
| 20 | Sobic.009G191300 | photosystem II reaction center W protein, chloroplast precursor, putative, expressed | K02721: photosystem II PsbW protein |
Gene co-expression network
Octagon: transcription factors
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