Gene annotation
Transcriptome id Sobic.005G030500.1
Synonym Sb05g002590, ATRR3, RR3, ARR8
Functional annotation OsRR10 type-A response regulator, expressed
UniProt A0A1B6PPW7
Pfam PF00072
Panther DB PTHR26402 PTHR26402:SF574
NCBI CDD -
KEGG Orthology K14492; two-component response regulator ARR-A family
Gene Ontology GO:0000160; phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT2G41310 : response regulator 3
RAP-DB (Rice) LOC_Os11g04720.2 : OsRR10 type-A response regulator, expressed
MaizeGDB (Corn) Zm00025a053682
Brachypodium -
Barley HORVU5Hr1G043090.5 , HORVU5Hr1G043090.4 , HORVU5Hr1G043090.7 , HORVU5Hr1G043090.6 , HORVU5Hr1G043090.1 , HORVU5Hr1G043090.3 , HORVU5Hr1G043090.2
Wheat TraesCS5B02G132900 , TraesCS5B02G132900 , TraesCS5A02G131600 , TraesCS5A02G131600 , TraesCS5D02G140200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G039600 -(PubMedID : 26465154)@expressed protein -
2 Sobic.003G237600 expressed protein -
3 Sobic.008G081200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed -
4 Sobic.002G213000 - -
5 Sobic.007G189700 - -
6 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
7 Sobic.001G189100 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
8 Sobic.009G254600 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.003G036100 - -
10 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
11 Sobic.001G068400 - -
12 Sobic.004G026300 heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
13 Sobic.004G035700 - -
14 Sobic.010G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@agenet domain containing protein, putative, expressed -
15 Sobic.008G030200 LTPL9 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
17 Sobic.004G353700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.009G244600 MYB family transcription factor, putative, expressed -
19 Sobic.003G235500 expressed protein -
20 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -


Gene co-expression network
sample Sobic005G030500 Sobic005G030500 Sobic005G039600 Sobic005G039600 Sobic005G030500--Sobic005G039600 Sobic003G237600 Sobic003G237600 Sobic005G030500--Sobic003G237600 Sobic008G081200 Sobic008G081200 Sobic005G030500--Sobic008G081200 Sobic002G213000 Sobic002G213000 Sobic005G030500--Sobic002G213000 Sobic007G189700 Sobic007G189700 Sobic005G030500--Sobic007G189700 Sobic001G189100 Sobic001G189100 Sobic005G030500--Sobic001G189100 Sobic009G254600 Sobic009G254600 Sobic005G030500--Sobic009G254600 Sobic003G036100 Sobic003G036100 Sobic005G030500--Sobic003G036100 Sobic001G520800 Sobic001G520800 Sobic005G039600--Sobic001G520800 Sobic007G034300 Sobic007G034300 Sobic005G039600--Sobic007G034300 Sobic003G199800 Sobic003G199800 Sobic005G039600--Sobic003G199800 Sobic003G310400 Sobic003G310400 Sobic005G039600--Sobic003G310400 Sobic003G231800 Sobic003G231800 Sobic005G039600--Sobic003G231800 Sobic003G431900 Sobic003G431900 Sobic005G039600--Sobic003G431900 Sobic009G244300 Sobic009G244300 Sobic005G039600--Sobic009G244300 Sobic004G035500 Sobic004G035500 Sobic005G039600--Sobic004G035500 Sobic005G039600--Sobic005G030500 Sobic003G237600--Sobic001G189100 Sobic001G355600 Sobic001G355600 Sobic003G237600--Sobic001G355600 Sobic003G237600--Sobic003G036100 Sobic003G237600--Sobic009G254600 Sobic009G222200 Sobic009G222200 Sobic003G237600--Sobic009G222200 Sobic010G183100 Sobic010G183100 Sobic003G237600--Sobic010G183100 Sobic004G035700 Sobic004G035700 Sobic003G237600--Sobic004G035700 Sobic008G106200 Sobic008G106200 Sobic003G237600--Sobic008G106200 Sobic010G038500 Sobic010G038500 Sobic008G081200--Sobic010G038500 Sobic008G081200--Sobic010G183100 Sobic008G081200--Sobic009G254600 Sobic001G068400 Sobic001G068400 Sobic008G081200--Sobic001G068400 Sobic002G040100 Sobic002G040100 Sobic008G081200--Sobic002G040100 Sobic008G081200--Sobic004G035700 Sobic008G081200--Sobic003G199800 Sobic008G081200--Sobic007G189700 Sobic010G276400 Sobic010G276400 Sobic008G081200--Sobic010G276400 Sobic002G213000--Sobic004G035700 Sobic002G213000--Sobic010G183100 Sobic002G213000--Sobic001G068400 Sobic001G297400 Sobic001G297400 Sobic002G213000--Sobic001G297400 Sobic002G213000--Sobic009G254600 Sobic002G213000--Sobic001G189100 Sobic002G213000--Sobic003G237600 Sobic002G213000--Sobic008G081200 Sobic007G189700--Sobic010G183100 Sobic007G189700--Sobic004G035700 Sobic010G030800 Sobic010G030800 Sobic007G189700--Sobic010G030800 Sobic007G189700--Sobic003G199800 Sobic007G189700--Sobic008G081200 Sobic007G189700--Sobic009G222200 Sobic007G189700--Sobic009G254600 Sobic007G189700--Sobic002G040100 Sobic001G406000 Sobic001G406000 Sobic007G189700--Sobic001G406000 Sobic001G189100--Sobic001G189100 Sobic001G189100--Sobic003G237600 Sobic001G189100--Sobic009G254600 Sobic001G189100--Sobic003G036100 Sobic001G189100--Sobic001G355600 Sobic001G189100--Sobic010G183100 Sobic001G189100--Sobic009G222200 Sobic001G189100--Sobic004G035700 Sobic001G189100--Sobic008G106200 Sobic009G254600--Sobic010G038500 Sobic009G254600--Sobic008G081200 Sobic009G254600--Sobic001G189100 Sobic009G254600--Sobic004G035700 Sobic009G254600--Sobic003G237600 Sobic009G254600--Sobic010G183100 Sobic009G254600--Sobic001G068400 Sobic009G254600--Sobic007G189700 Sobic003G036100--Sobic001G189100 Sobic003G036100--Sobic003G237600 Sobic004G353700 Sobic004G353700 Sobic003G036100--Sobic004G353700 Sobic003G036100--Sobic007G189700 Sobic003G036100--Sobic010G030800 Sobic003G036100--Sobic009G222200 Sobic003G036100--Sobic009G254600 Sobic001G111700 Sobic001G111700 Sobic003G036100--Sobic001G111700
Octagon: transcription factors


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