Gene annotation
| Transcriptome id | Sobic.003G234400.4 |
|---|---|
| Synonym | CA4,CA; BCA4, ATBCA4, BCA4, Sb03g029180, CA4 |
| Functional annotation | CA (PubMedID : 19549309) SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) carbonic anhydrase (PubMedID : 26904072) - (PubMedID : 26976818) carbonic anhydrase, chloroplast precursor, putative, expressed |
| UniProt | A0A1B6Q4Y1 |
| Pfam | PF00484 |
| Panther DB | PTHR11002 PTHR11002:SF7 |
| NCBI CDD | KOG1578; Predicted carbonic anhydrase involved in protection against oxidative damage |
| KEGG Orthology | K01673; cynT, carbonic anhydrase |
| Gene Ontology | GO:0008270; zinc ion binding GO:0004089carbonate dehydratase activity |
Orthologs (automatic annotation)
| TAIR | AT1G70410 : beta carbonic anhydrase 4 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g45274.4 : carbonic anhydrase, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a028290 , Zm00025a038668 , Zm00025a028289 |
| Brachypodium | KQK08917 , KQK08916 , KQK08915 , KQK08919 , PNT72466 |
| Barley | HORVU3Hr1G057090.10 , HORVU3Hr1G057090.11 , HORVU3Hr1G057090.12 , HORVU3Hr1G057090.13 , HORVU3Hr1G057090.14 , HORVU3Hr1G057090.15 , HORVU3Hr1G057090.7 , HORVU3Hr1G057090.5 , HORVU3Hr1G057090.6 , HORVU3Hr1G057090.8 , HORVU3Hr1G057090.9 , HORVU3Hr1G057090.2 , HORVU3Hr1G057090.3 , HORVU3Hr1G057090.1 , HORVU3Hr1G057090.4 |
| Wheat | TraesCS7B02G354800 , TraesCS7D02G443500 , TraesCS7D02G443400 , TraesCS7B02G354900 |
| Populus | - |
JBrowse
| Sobic.003G234400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G008700 | bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed | K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase |
| 2 | Sobic.010G095000 | kinase, pfkB family, putative, expressed | K00847: E2.7.1.4, fructokinase |
| 3 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 4 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 5 | Sobic.004G353700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 6 | Sobic.008G061401 | - | - |
| 7 | Sobic.001G076900 | Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed | - |
| 8 | Sobic.004G026300 | heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 9 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 10 | Sobic.010G153900 | Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed | K00797: speE, SRM, spermidine synthase |
| 11 | Sobic.003G370000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed | K03542: photosystem II 22kDa protein |
| 12 | Sobic.007G140800 | Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed | K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase) |
| 13 | Sobic.003G199800 | expressed protein | - |
| 14 | Sobic.009G104800 | AMP deaminase, putative, expressed | K01490: AMP deaminase |
| 15 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 16 | Sobic.005G056400 | Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 17 | Sobic.004G238600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@starch synthase, putative, expressed | K00703: starch synthase |
| 18 | Sobic.004G283100 | -(PubMedID : 26465154)@expressed protein | - |
| 19 | Sobic.004G125700 | isochorismatase family protein, putative, expressed | - |
| 20 | Sobic.001G329400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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