Gene annotation
Transcriptome id Sobic.001G076900.1,Sobic.001G076900.2
Synonym Sb01g006950
Functional annotation Uncharacterised protein family (UPF0497) (PubMedID : 26465154)
membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5WZ91 , A0A1B6QHT0
Pfam PF04535
Panther DB PTHR32021 PTHR32021:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G50810 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os03g55870.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008321
Brachypodium PNT74082 , KQK13010
Barley -
Wheat TraesCS5D02G413900
Populus -


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cDNA sequences
Sobic.001G076900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G056400 Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
2 Sobic.003G370000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
3 Sobic.010G095000 kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
4 Sobic.001G020100 expressed protein -
5 Sobic.004G305800 expressed protein -
6 Sobic.003G234400 CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
7 Sobic.005G202500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tropinone reductase 2, putative, expressed K08081: tropinone reductase I
8 Sobic.002G370600 - -
9 Sobic.004G283100 -(PubMedID : 26465154)@expressed protein -
10 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
11 Sobic.006G008700 bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase
12 Sobic.005G200200 expressed protein -
13 Sobic.004G267000 RAD-like 6(PubMedID : 26465154)@MYB family transcription factor, putative, expressed -
14 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
15 Sobic.008G061401 - -
16 Sobic.009G043000 thioredoxin, putative, expressed -
17 Sobic.003G241900 expressed protein -
18 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
19 Sobic.010G201700 GA16396-PA, putative, expressed -
20 Sobic.006G057866 - K12129: pseudo-response regulator 7


Gene co-expression network
sample Sobic001G076900 Sobic001G076900 Sobic005G056400 Sobic005G056400 Sobic001G076900--Sobic005G056400 Sobic003G370000 Sobic003G370000 Sobic001G076900--Sobic003G370000 Sobic010G095000 Sobic010G095000 Sobic001G076900--Sobic010G095000 Sobic001G020100 Sobic001G020100 Sobic001G076900--Sobic001G020100 Sobic004G305800 Sobic004G305800 Sobic001G076900--Sobic004G305800 Sobic003G234400 Sobic003G234400 Sobic001G076900--Sobic003G234400 Sobic005G202500 Sobic005G202500 Sobic001G076900--Sobic005G202500 Sobic002G370600 Sobic002G370600 Sobic001G076900--Sobic002G370600 Sobic004G283100 Sobic004G283100 Sobic001G076900--Sobic004G283100 Sobic007G161500 Sobic007G161500 Sobic005G056400--Sobic007G161500 Sobic005G056400--Sobic004G305800 Sobic003G127800 Sobic003G127800 Sobic005G056400--Sobic003G127800 Sobic005G056400--Sobic003G370000 Sobic010G188300 Sobic010G188300 Sobic005G056400--Sobic010G188300 Sobic005G056400--Sobic001G076900 Sobic001G491000 Sobic001G491000 Sobic005G056400--Sobic001G491000 Sobic001G329400 Sobic001G329400 Sobic005G056400--Sobic001G329400 Sobic006G057866 Sobic006G057866 Sobic005G056400--Sobic006G057866 Sobic003G370000--Sobic007G161500 Sobic001G289500 Sobic001G289500 Sobic003G370000--Sobic001G289500 Sobic003G370000--Sobic005G056400 Sobic003G370000--Sobic002G370600 Sobic002G314300 Sobic002G314300 Sobic003G370000--Sobic002G314300 Sobic003G370000--Sobic004G305800 Sobic003G370000--Sobic001G020100 Sobic004G238600 Sobic004G238600 Sobic003G370000--Sobic004G238600 Sobic003G370000--Sobic001G076900 Sobic010G095000--Sobic001G076900 Sobic010G095000--Sobic003G234400 Sobic006G008700 Sobic006G008700 Sobic010G095000--Sobic006G008700 Sobic010G095000--Sobic005G056400 Sobic010G153900 Sobic010G153900 Sobic010G095000--Sobic010G153900 Sobic010G095000--Sobic004G305800 Sobic010G201700 Sobic010G201700 Sobic010G095000--Sobic010G201700 Sobic004G125700 Sobic004G125700 Sobic010G095000--Sobic004G125700 Sobic005G200200 Sobic005G200200 Sobic010G095000--Sobic005G200200 Sobic001G020100--Sobic001G491000 Sobic001G020100--Sobic003G370000 Sobic001G020100--Sobic001G289500 Sobic001G020100--Sobic007G161500 Sobic006G130300 Sobic006G130300 Sobic001G020100--Sobic006G130300 Sobic001G020100--Sobic005G056400 Sobic001G020100--Sobic001G076900 Sobic006G238200 Sobic006G238200 Sobic001G020100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic001G020100--Sobic001G100000 Sobic004G305800--Sobic002G370600 Sobic004G305800--Sobic001G491000 Sobic004G305800--Sobic005G056400 Sobic009G129300 Sobic009G129300 Sobic004G305800--Sobic009G129300 Sobic004G268000 Sobic004G268000 Sobic004G305800--Sobic004G268000 Sobic004G305800--Sobic010G201700 Sobic004G305800--Sobic007G161500 Sobic003G431900 Sobic003G431900 Sobic004G305800--Sobic003G431900 Sobic004G305800--Sobic006G238200 Sobic003G234400--Sobic006G008700 Sobic003G234400--Sobic010G095000 Sobic003G303700 Sobic003G303700 Sobic003G234400--Sobic003G303700 Sobic008G021300 Sobic008G021300 Sobic003G234400--Sobic008G021300 Sobic004G353700 Sobic004G353700 Sobic003G234400--Sobic004G353700 Sobic008G061401 Sobic008G061401 Sobic003G234400--Sobic008G061401 Sobic003G234400--Sobic001G076900 Sobic004G026300 Sobic004G026300 Sobic003G234400--Sobic004G026300 Sobic003G234400--Sobic010G201700 Sobic009G043000 Sobic009G043000 Sobic005G202500--Sobic009G043000 Sobic005G202500--Sobic001G076900 Sobic005G202500--Sobic002G370600 Sobic003G371600 Sobic003G371600 Sobic005G202500--Sobic003G371600 Sobic005G202500--Sobic003G370000 Sobic004G051100 Sobic004G051100 Sobic005G202500--Sobic004G051100 Sobic005G202500--Sobic008G061401 Sobic010G245200 Sobic010G245200 Sobic005G202500--Sobic010G245200 Sobic006G188000 Sobic006G188000 Sobic005G202500--Sobic006G188000 Sobic002G370600--Sobic004G305800 Sobic002G370600--Sobic001G491000 Sobic010G181300 Sobic010G181300 Sobic002G370600--Sobic010G181300 Sobic002G370600--Sobic006G238200 Sobic002G370600--Sobic010G245200 Sobic003G431700 Sobic003G431700 Sobic002G370600--Sobic003G431700 Sobic002G370600--Sobic001G289500 Sobic002G370600--Sobic003G370000 Sobic002G370600--Sobic009G043000 Sobic004G272100 Sobic004G272100 Sobic004G283100--Sobic004G272100 Sobic008G053200 Sobic008G053200 Sobic004G283100--Sobic008G053200 Sobic004G283100--Sobic004G305800 Sobic004G283100--Sobic004G238600 Sobic004G283100--Sobic010G201700 Sobic004G283100--Sobic001G329400 Sobic004G283100--Sobic002G370600 Sobic004G283100--Sobic009G043000 Sobic004G283100--Sobic009G129300
Octagon: transcription factors


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