Gene annotation
Transcriptome id Sobic.005G202500.1
Synonym Sb05g025820
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tropinone reductase 2, putative, expressed
UniProt C5Y7C9
Pfam PF08659
Panther DB PTHR24322 PTHR24322:SF593
NCBI CDD KOG0725; Reductases with broad range of substrate specificities
KEGG Orthology K08081; tropinone reductase I
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G29360 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os11g43200.1 : tropinone reductase 2, putative, expressed
MaizeGDB (Corn) Zm00025a029210 , Zm00025a029213
Brachypodium -
Barley HORVU3Hr1G090170.8 , HORVU3Hr1G090170.9 , HORVU3Hr1G090170.1 , HORVU3Hr1G090170.2 , HORVU3Hr1G090170.3 , HORVU3Hr1G090170.4 , HORVU3Hr1G090170.5 , HORVU3Hr1G090170.6 , HORVU3Hr1G090170.7 , HORVU3Hr1G090170.12 , HORVU3Hr1G090170.10 , HORVU3Hr1G090170.11 , HORVU3Hr1G090170.16 , HORVU3Hr1G090170.14 , HORVU3Hr1G090170.15
Wheat TraesCS1A02G383700 , TraesCS2B02G388300 , TraesCS2B02G388300 , TraesCS2A02G371000 , TraesCS3D02G396900 , TraesCS1A02G390900 , TraesCS4A02G328000 , TraesCS2D02G367400 , TraesCS2D02G367400 , TraesCS4D02G309300 , TraesCS5B02G542200 , TraesCS5D02G545800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G043000 thioredoxin, putative, expressed -
2 Sobic.001G076900 Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed -
3 Sobic.002G370600 - -
4 Sobic.003G371600 proton-dependent oligopeptide transport, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
5 Sobic.003G370000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
6 Sobic.004G051100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
7 Sobic.008G061401 - -
8 Sobic.010G245200 expressed protein -
9 Sobic.006G188000 expressed protein -
10 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
11 Sobic.007G173800 uncharacterized protein ycf39, putative, expressed -
12 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
13 Sobic.006G093900 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
14 Sobic.004G283100 -(PubMedID : 26465154)@expressed protein -
15 Sobic.010G201700 GA16396-PA, putative, expressed -
16 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
17 Sobic.005G200200 expressed protein -
18 Sobic.005G194100 expressed protein -
19 Sobic.007G034300 expressed protein -
20 Sobic.008G188600 glyoxalase family protein, putative, expressed -


Gene co-expression network
sample Sobic005G202500 Sobic005G202500 Sobic009G043000 Sobic009G043000 Sobic005G202500--Sobic009G043000 Sobic001G076900 Sobic001G076900 Sobic005G202500--Sobic001G076900 Sobic002G370600 Sobic002G370600 Sobic005G202500--Sobic002G370600 Sobic003G371600 Sobic003G371600 Sobic005G202500--Sobic003G371600 Sobic003G370000 Sobic003G370000 Sobic005G202500--Sobic003G370000 Sobic004G051100 Sobic004G051100 Sobic005G202500--Sobic004G051100 Sobic008G061401 Sobic008G061401 Sobic005G202500--Sobic008G061401 Sobic010G245200 Sobic010G245200 Sobic005G202500--Sobic010G245200 Sobic006G188000 Sobic006G188000 Sobic005G202500--Sobic006G188000 Sobic010G201700 Sobic010G201700 Sobic009G043000--Sobic010G201700 Sobic003G002300 Sobic003G002300 Sobic009G043000--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic009G043000--Sobic008G102000 Sobic001G102800 Sobic001G102800 Sobic009G043000--Sobic001G102800 Sobic007G225500 Sobic007G225500 Sobic009G043000--Sobic007G225500 Sobic004G272100 Sobic004G272100 Sobic009G043000--Sobic004G272100 Sobic006G207800 Sobic006G207800 Sobic009G043000--Sobic006G207800 Sobic009G140600 Sobic009G140600 Sobic009G043000--Sobic009G140600 Sobic001G519800 Sobic001G519800 Sobic009G043000--Sobic001G519800 Sobic005G056400 Sobic005G056400 Sobic001G076900--Sobic005G056400 Sobic001G076900--Sobic003G370000 Sobic010G095000 Sobic010G095000 Sobic001G076900--Sobic010G095000 Sobic001G020100 Sobic001G020100 Sobic001G076900--Sobic001G020100 Sobic004G305800 Sobic004G305800 Sobic001G076900--Sobic004G305800 Sobic003G234400 Sobic003G234400 Sobic001G076900--Sobic003G234400 Sobic001G076900--Sobic005G202500 Sobic001G076900--Sobic002G370600 Sobic004G283100 Sobic004G283100 Sobic001G076900--Sobic004G283100 Sobic002G370600--Sobic004G305800 Sobic001G491000 Sobic001G491000 Sobic002G370600--Sobic001G491000 Sobic010G181300 Sobic010G181300 Sobic002G370600--Sobic010G181300 Sobic006G238200 Sobic006G238200 Sobic002G370600--Sobic006G238200 Sobic002G370600--Sobic010G245200 Sobic003G431700 Sobic003G431700 Sobic002G370600--Sobic003G431700 Sobic001G289500 Sobic001G289500 Sobic002G370600--Sobic001G289500 Sobic002G370600--Sobic003G370000 Sobic002G370600--Sobic009G043000 Sobic003G371600--Sobic008G102000 Sobic003G378600 Sobic003G378600 Sobic003G371600--Sobic003G378600 Sobic005G194100 Sobic005G194100 Sobic003G371600--Sobic005G194100 Sobic006G093900 Sobic006G093900 Sobic003G371600--Sobic006G093900 Sobic003G412900 Sobic003G412900 Sobic003G371600--Sobic003G412900 Sobic008G171300 Sobic008G171300 Sobic003G371600--Sobic008G171300 Sobic004G239100 Sobic004G239100 Sobic003G371600--Sobic004G239100 Sobic003G371600--Sobic009G140600 Sobic003G371600--Sobic009G043000 Sobic007G161500 Sobic007G161500 Sobic003G370000--Sobic007G161500 Sobic003G370000--Sobic001G289500 Sobic003G370000--Sobic005G056400 Sobic003G370000--Sobic002G370600 Sobic002G314300 Sobic002G314300 Sobic003G370000--Sobic002G314300 Sobic003G370000--Sobic004G305800 Sobic003G370000--Sobic001G020100 Sobic004G238600 Sobic004G238600 Sobic003G370000--Sobic004G238600 Sobic003G370000--Sobic001G076900 Sobic004G051100--Sobic006G188000 Sobic002G211000 Sobic002G211000 Sobic004G051100--Sobic002G211000 Sobic007G034300 Sobic007G034300 Sobic004G051100--Sobic007G034300 Sobic004G051100--Sobic010G245200 Sobic004G051100--Sobic005G202500 Sobic001G517700 Sobic001G517700 Sobic004G051100--Sobic001G517700 Sobic004G051100--Sobic002G370600 Sobic004G051100--Sobic004G283100 Sobic007G053800 Sobic007G053800 Sobic004G051100--Sobic007G053800 Sobic008G061401--Sobic003G234400 Sobic008G061401--Sobic009G043000 Sobic006G067400 Sobic006G067400 Sobic008G061401--Sobic006G067400 Sobic008G061401--Sobic003G370000 Sobic010G153900 Sobic010G153900 Sobic008G061401--Sobic010G153900 Sobic005G200200 Sobic005G200200 Sobic008G061401--Sobic005G200200 Sobic008G188600 Sobic008G188600 Sobic008G061401--Sobic008G188600 Sobic007G173800 Sobic007G173800 Sobic008G061401--Sobic007G173800 Sobic008G061401--Sobic001G076900 Sobic010G245200--Sobic007G053800 Sobic010G245200--Sobic002G370600 Sobic001G005200 Sobic001G005200 Sobic010G245200--Sobic001G005200 Sobic010G245200--Sobic003G431700 Sobic010G245200--Sobic009G140600 Sobic001G122300 Sobic001G122300 Sobic010G245200--Sobic001G122300 Sobic010G245200--Sobic006G188000 Sobic010G245200--Sobic003G378600 Sobic010G245200--Sobic008G102000 Sobic006G188000--Sobic010G245200 Sobic010G058200 Sobic010G058200 Sobic006G188000--Sobic010G058200 Sobic006G114900 Sobic006G114900 Sobic006G188000--Sobic006G114900 Sobic006G188000--Sobic002G370600 Sobic006G188000--Sobic003G431700 Sobic006G188000--Sobic007G053800 Sobic006G188000--Sobic001G517700 Sobic006G188000--Sobic006G207800 Sobic006G102000 Sobic006G102000 Sobic006G188000--Sobic006G102000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.