Gene annotation
| Transcriptome id | Sobic.010G153900.3,Sobic.010G153900.1 |
|---|---|
| Synonym | SPDS;Spermidine synthase, SPDS, SPMS, ATSPDS3, Sb10g020570, SPDS;Spermidine synthase, SPDS3 |
| Functional annotation | Spermidine synthase (PubMedID : 27325899) Up-regulated by silicon application under drought stress (PubMedID : 24813726) "OsSPMS1(Ortholog in rice:Tao et al., 2018)" (PubMedID : 31659935) spermidine synthase, putative, expressed |
| UniProt | A0A194YJG7 , C5Z3M8 |
| Pfam | PF01564 |
| Panther DB | PTHR11558 PTHR11558:SF29 |
| NCBI CDD | KOG1562; Spermidine synthase |
| KEGG Orthology | K00797; speE, SRM, spermidine synthase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G53120 : spermidine synthase 3 |
|---|---|
| RAP-DB (Rice) | LOC_Os02g15550.2 : spermidine synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a050906 |
| Brachypodium | KQK18093 , KQK18092 , KQK18091 , KQK18094 |
| Barley | HORVU7Hr1G079430.18 , HORVU7Hr1G079430.19 , HORVU7Hr1G079430.16 , HORVU7Hr1G079430.17 , HORVU7Hr1G079430.14 , HORVU7Hr1G079430.15 , HORVU7Hr1G079430.12 , HORVU7Hr1G079430.13 , HORVU7Hr1G079430.10 , HORVU7Hr1G079430.11 , HORVU7Hr1G079430.24 , HORVU7Hr1G079430.23 , HORVU7Hr1G079430.22 , HORVU7Hr1G079430.21 , HORVU7Hr1G079430.20 , HORVU7Hr1G079430.8 , HORVU7Hr1G079430.9 , HORVU7Hr1G079430.4 , HORVU7Hr1G079430.5 , HORVU7Hr1G079430.6 , HORVU7Hr1G079430.7 , HORVU7Hr1G079430.2 , HORVU7Hr1G079430.3 |
| Wheat | TraesCS7B02G232700 , TraesCS7D02G328500 , TraesCS7D02G328500 , TraesCS7A02G350100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G140800 | Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed | K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase) |
| 2 | Sobic.008G188600 | glyoxalase family protein, putative, expressed | - |
| 3 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 4 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 5 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 6 | Sobic.010G095000 | kinase, pfkB family, putative, expressed | K00847: E2.7.1.4, fructokinase |
| 7 | Sobic.006G207800 | Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed | - |
| 8 | Sobic.003G241900 | expressed protein | - |
| 9 | Sobic.001G020100 | expressed protein | - |
| 10 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 11 | Sobic.007G173800 | uncharacterized protein ycf39, putative, expressed | - |
| 12 | Sobic.009G059300 | haloacid dehalogenase-like hydrolase family protein, putative, expressed | - |
| 13 | Sobic.003G024300 | glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed | K05941: glutathione gamma-glutamylcysteinyltransferase |
| 14 | Sobic.009G113800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed | K01188: beta-glucosidase |
| 15 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 16 | Sobic.008G115900 | mitochondrial carrier protein, putative, expressed | - |
| 17 | Sobic.001G102800 | expressed protein | - |
| 18 | Sobic.006G067400 | Ser/Thr protein phosphatase family protein, putative, expressed | - |
| 19 | Sobic.008G061401 | - | - |
| 20 | Sobic.002G421300 | stress responsive protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
