Gene annotation
Transcriptome id Sobic.003G241900.1
Synonym Sb03g029870, ORG1
Functional annotation expressed protein
UniProt C5XFA0
Pfam PF00069
Panther DB PTHR24056 PTHR24056:SF181
NCBI CDD KOG0594; Protein kinase PCTAIRE and related kinases
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G53450 : OBP3-responsive gene 1
RAP-DB (Rice) LOC_Os01g46720.1 : expressed protein
MaizeGDB (Corn) Zm00025a028201
Brachypodium KQK09007
Barley HORVU3Hr1G059130.28 , HORVU3Hr1G059130.7 , HORVU3Hr1G059130.6 , HORVU3Hr1G059130.5 , HORVU3Hr1G059130.8 , HORVU3Hr1G059130.13 , HORVU3Hr1G059130.12 , HORVU3Hr1G059130.11 , HORVU3Hr1G059130.10 , HORVU3Hr1G059130.17 , HORVU3Hr1G059130.26
Wheat TraesCS3A02G237400 , TraesCS3A02G237400 , TraesCS3D02G237800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G241900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G244300 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
2 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
3 Sobic.002G421300 stress responsive protein, putative, expressed -
4 Sobic.004G267000 RAD-like 6(PubMedID : 26465154)@MYB family transcription factor, putative, expressed -
5 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
6 Sobic.007G034300 expressed protein -
7 Sobic.004G305800 expressed protein -
8 Sobic.001G076900 Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed -
9 Sobic.010G201700 GA16396-PA, putative, expressed -
10 Sobic.008G104601 - -
11 Sobic.003G234400 CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
12 Sobic.010G095000 kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
13 Sobic.004G283100 -(PubMedID : 26465154)@expressed protein -
14 Sobic.009G043000 thioredoxin, putative, expressed -
15 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
16 Sobic.003G303700 Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein -
17 Sobic.009G244600 MYB family transcription factor, putative, expressed -
18 Sobic.005G056400 Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
19 Sobic.006G008700 bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase
20 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)


Gene co-expression network
sample Sobic003G241900 Sobic003G241900 Sobic009G244300 Sobic009G244300 Sobic003G241900--Sobic009G244300 Sobic010G153900 Sobic010G153900 Sobic003G241900--Sobic010G153900 Sobic002G421300 Sobic002G421300 Sobic003G241900--Sobic002G421300 Sobic004G267000 Sobic004G267000 Sobic003G241900--Sobic004G267000 Sobic003G231800 Sobic003G231800 Sobic003G241900--Sobic003G231800 Sobic007G034300 Sobic007G034300 Sobic003G241900--Sobic007G034300 Sobic004G305800 Sobic004G305800 Sobic003G241900--Sobic004G305800 Sobic001G076900 Sobic001G076900 Sobic003G241900--Sobic001G076900 Sobic010G201700 Sobic010G201700 Sobic003G241900--Sobic010G201700 Sobic009G244300--Sobic003G231800 Sobic009G244300--Sobic004G267000 Sobic009G244600 Sobic009G244600 Sobic009G244300--Sobic009G244600 Sobic009G244300--Sobic007G034300 Sobic009G244300--Sobic003G241900 Sobic001G520800 Sobic001G520800 Sobic009G244300--Sobic001G520800 Sobic009G244300--Sobic004G305800 Sobic008G104601 Sobic008G104601 Sobic009G244300--Sobic008G104601 Sobic003G199800 Sobic003G199800 Sobic009G244300--Sobic003G199800 Sobic007G140800 Sobic007G140800 Sobic010G153900--Sobic007G140800 Sobic008G188600 Sobic008G188600 Sobic010G153900--Sobic008G188600 Sobic009G043000 Sobic009G043000 Sobic010G153900--Sobic009G043000 Sobic010G153900--Sobic010G201700 Sobic003G303700 Sobic003G303700 Sobic010G153900--Sobic003G303700 Sobic010G095000 Sobic010G095000 Sobic010G153900--Sobic010G095000 Sobic006G207800 Sobic006G207800 Sobic010G153900--Sobic006G207800 Sobic010G153900--Sobic003G241900 Sobic001G020100 Sobic001G020100 Sobic010G153900--Sobic001G020100 Sobic002G421300--Sobic003G241900 Sobic002G421300--Sobic010G153900 Sobic004G026300 Sobic004G026300 Sobic002G421300--Sobic004G026300 Sobic008G108400 Sobic008G108400 Sobic002G421300--Sobic008G108400 Sobic002G421300--Sobic003G303700 Sobic002G421300--Sobic003G199800 Sobic002G421300--Sobic009G043000 Sobic003G131000 Sobic003G131000 Sobic002G421300--Sobic003G131000 Sobic002G098800 Sobic002G098800 Sobic002G421300--Sobic002G098800 Sobic004G267000--Sobic009G244300 Sobic004G267000--Sobic009G244600 Sobic004G267000--Sobic003G231800 Sobic004G267000--Sobic003G241900 Sobic004G267000--Sobic001G076900 Sobic005G056400 Sobic005G056400 Sobic004G267000--Sobic005G056400 Sobic002G116000 Sobic002G116000 Sobic004G267000--Sobic002G116000 Sobic004G267000--Sobic004G305800 Sobic007G004850 Sobic007G004850 Sobic004G267000--Sobic007G004850 Sobic003G231800--Sobic009G244300 Sobic003G231800--Sobic009G244600 Sobic003G231800--Sobic004G267000 Sobic010G183100 Sobic010G183100 Sobic003G231800--Sobic010G183100 Sobic003G231800--Sobic007G034300 Sobic003G231800--Sobic001G520800 Sobic006G006700 Sobic006G006700 Sobic003G231800--Sobic006G006700 Sobic009G254600 Sobic009G254600 Sobic003G231800--Sobic009G254600 Sobic003G235500 Sobic003G235500 Sobic003G231800--Sobic003G235500 Sobic007G034300--Sobic001G520800 Sobic005G165500 Sobic005G165500 Sobic007G034300--Sobic005G165500 Sobic007G034300--Sobic009G244300 Sobic008G053200 Sobic008G053200 Sobic007G034300--Sobic008G053200 Sobic004G283100 Sobic004G283100 Sobic007G034300--Sobic004G283100 Sobic007G034300--Sobic008G104601 Sobic002G233300 Sobic002G233300 Sobic007G034300--Sobic002G233300 Sobic007G034300--Sobic003G231800 Sobic007G034300--Sobic004G305800 Sobic002G370600 Sobic002G370600 Sobic004G305800--Sobic002G370600 Sobic001G491000 Sobic001G491000 Sobic004G305800--Sobic001G491000 Sobic004G305800--Sobic005G056400 Sobic009G129300 Sobic009G129300 Sobic004G305800--Sobic009G129300 Sobic004G268000 Sobic004G268000 Sobic004G305800--Sobic004G268000 Sobic004G305800--Sobic010G201700 Sobic007G161500 Sobic007G161500 Sobic004G305800--Sobic007G161500 Sobic003G431900 Sobic003G431900 Sobic004G305800--Sobic003G431900 Sobic006G238200 Sobic006G238200 Sobic004G305800--Sobic006G238200 Sobic001G076900--Sobic005G056400 Sobic003G370000 Sobic003G370000 Sobic001G076900--Sobic003G370000 Sobic001G076900--Sobic010G095000 Sobic001G076900--Sobic001G020100 Sobic001G076900--Sobic004G305800 Sobic003G234400 Sobic003G234400 Sobic001G076900--Sobic003G234400 Sobic005G202500 Sobic005G202500 Sobic001G076900--Sobic005G202500 Sobic001G076900--Sobic002G370600 Sobic001G076900--Sobic004G283100 Sobic010G201700--Sobic009G043000 Sobic004G272100 Sobic004G272100 Sobic010G201700--Sobic004G272100 Sobic003G002300 Sobic003G002300 Sobic010G201700--Sobic003G002300 Sobic001G102800 Sobic001G102800 Sobic010G201700--Sobic001G102800 Sobic001G519800 Sobic001G519800 Sobic010G201700--Sobic001G519800 Sobic007G225500 Sobic007G225500 Sobic010G201700--Sobic007G225500 Sobic008G102000 Sobic008G102000 Sobic010G201700--Sobic008G102000 Sobic010G201700--Sobic006G207800 Sobic004G308700 Sobic004G308700 Sobic010G201700--Sobic004G308700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.