Gene annotation
| Transcriptome id | Sobic.006G008700.2 |
|---|---|
| Synonym | ASA1, Sb06g000880, APS2 |
| Functional annotation | bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed |
| UniProt | A0A1Z5RBG0 |
| Pfam | PF14306 PF01747 |
| Panther DB | PTHR11055 PTHR11055:SF18 |
| NCBI CDD | - |
| KEGG Orthology | K13811; 3'-phosphoadenosine 5'-phosphosulfate synthase |
| Gene Ontology | GO:0004781; sulfate adenylyltransferase (ATP) activity |
Orthologs (automatic annotation)
| TAIR | AT1G19920 : Pseudouridine synthase/archaeosine transglycosylase-like family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g02050.1 : bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a012206 |
| Brachypodium | KQJ81641 |
| Barley | HORVU2Hr1G004890.5 , HORVU2Hr1G004890.1 , HORVU2Hr1G004890.6 , HORVU2Hr1G004890.3 , HORVU2Hr1G004890.2 , HORVU2Hr1G004890.4 |
| Wheat | TraesCS2A02G032500 , TraesCS2B02G046500 , TraesCS2D02G031800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G234400 | CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed | K01673: cynT, carbonic anhydrase |
| 2 | Sobic.010G095000 | kinase, pfkB family, putative, expressed | K00847: E2.7.1.4, fructokinase |
| 3 | Sobic.003G303700 | Protein thylakoid membrane phosphoprotein 14 kda (Os)(PubMedID : 27208977)@expressed protein | - |
| 4 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 5 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 6 | Sobic.004G125700 | isochorismatase family protein, putative, expressed | - |
| 7 | Sobic.007G140800 | Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed | K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase) |
| 8 | Sobic.001G076900 | Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed | - |
| 9 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 10 | Sobic.009G043000 | thioredoxin, putative, expressed | - |
| 11 | Sobic.010G153900 | Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed | K00797: speE, SRM, spermidine synthase |
| 12 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 13 | Sobic.001G020100 | expressed protein | - |
| 14 | Sobic.002G051100 | Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 15 | Sobic.009G104800 | AMP deaminase, putative, expressed | K01490: AMP deaminase |
| 16 | Sobic.008G188600 | glyoxalase family protein, putative, expressed | - |
| 17 | Sobic.003G199800 | expressed protein | - |
| 18 | Sobic.004G283100 | -(PubMedID : 26465154)@expressed protein | - |
| 19 | Sobic.005G056400 | Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 20 | Sobic.005G200200 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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