Gene annotation
Transcriptome id Sobic.006G057866.2,Sobic.006G057866.1
Synonym -
Functional annotation -
UniProt G4XFK4 , A0A059PU39 , A0A059PU55 , A0A1Z5RDH5 , A0A059PTK5 , G4XFJ9
Pfam PF00072
Panther DB PTHR26402 PTHR26402:SF525
NCBI CDD -
KEGG Orthology K12129; pseudo-response regulator 7
Gene Ontology GO:0000160; phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT5G02810 : pseudo-response regulator 7
RAP-DB (Rice) LOC_Os07g49460.2,LOC_Os07g49460.4 : response regulator receiver domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049277 , Zm00025a052710 , Zm00025a015530
Brachypodium PNT74526 , KQK14462 , KQK14460 , KQK14461
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.009G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
3 Sobic.005G056400 Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
4 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
5 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
6 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
7 Sobic.003G026600 osFTL8 FT-Like8 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
8 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
9 Sobic.007G006400 - -
10 Sobic.004G059800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT1@3 - Na+ transporter, expressed -
11 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -
12 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
13 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
14 Sobic.010G188300 fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
15 Sobic.004G305800 expressed protein -
16 Sobic.008G104601 - -
17 Sobic.001G132600 histidine acid phosphatase, putative, expressed K13024: PPIP5K, inositol-hexakisphosphate/diphosphoinositol-pentakisphosphate 1-kinase
18 Sobic.009G104800 AMP deaminase, putative, expressed K01490: AMP deaminase
19 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
20 Sobic.006G077400 PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic006G057866 Sobic006G057866 Sobic003G127800 Sobic003G127800 Sobic006G057866--Sobic003G127800 Sobic009G048900 Sobic009G048900 Sobic006G057866--Sobic009G048900 Sobic005G056400 Sobic005G056400 Sobic006G057866--Sobic005G056400 Sobic001G329400 Sobic001G329400 Sobic006G057866--Sobic001G329400 Sobic007G161500 Sobic007G161500 Sobic006G057866--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic006G057866--Sobic006G244000 Sobic003G026600 Sobic003G026600 Sobic006G057866--Sobic003G026600 Sobic004G112100 Sobic004G112100 Sobic006G057866--Sobic004G112100 Sobic007G006400 Sobic007G006400 Sobic006G057866--Sobic007G006400 Sobic003G127800--Sobic007G161500 Sobic004G059800 Sobic004G059800 Sobic003G127800--Sobic004G059800 Sobic010G039500 Sobic010G039500 Sobic003G127800--Sobic010G039500 Sobic001G491000 Sobic001G491000 Sobic003G127800--Sobic001G491000 Sobic009G129300 Sobic009G129300 Sobic003G127800--Sobic009G129300 Sobic003G127800--Sobic005G056400 Sobic003G127800--Sobic001G329400 Sobic003G367500 Sobic003G367500 Sobic003G127800--Sobic003G367500 Sobic006G153400 Sobic006G153400 Sobic003G127800--Sobic006G153400 Sobic009G048900--Sobic004G112100 Sobic009G048900--Sobic006G244000 Sobic009G048900--Sobic006G153400 Sobic010G104800 Sobic010G104800 Sobic009G048900--Sobic010G104800 Sobic009G048900--Sobic006G057866 Sobic001G446100 Sobic001G446100 Sobic009G048900--Sobic001G446100 Sobic009G048900--Sobic003G127800 Sobic004G215800 Sobic004G215800 Sobic009G048900--Sobic004G215800 Sobic001G540300 Sobic001G540300 Sobic009G048900--Sobic001G540300 Sobic005G056400--Sobic007G161500 Sobic004G305800 Sobic004G305800 Sobic005G056400--Sobic004G305800 Sobic005G056400--Sobic003G127800 Sobic003G370000 Sobic003G370000 Sobic005G056400--Sobic003G370000 Sobic010G188300 Sobic010G188300 Sobic005G056400--Sobic010G188300 Sobic001G076900 Sobic001G076900 Sobic005G056400--Sobic001G076900 Sobic005G056400--Sobic001G491000 Sobic005G056400--Sobic001G329400 Sobic005G056400--Sobic006G057866 Sobic003G024300 Sobic003G024300 Sobic001G329400--Sobic003G024300 Sobic001G329400--Sobic007G161500 Sobic001G329400--Sobic006G244000 Sobic001G329400--Sobic003G127800 Sobic001G329400--Sobic009G129300 Sobic007G140800 Sobic007G140800 Sobic001G329400--Sobic007G140800 Sobic004G283100 Sobic004G283100 Sobic001G329400--Sobic004G283100 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic007G161500--Sobic005G056400 Sobic007G161500--Sobic003G127800 Sobic007G161500--Sobic010G188300 Sobic007G161500--Sobic001G329400 Sobic007G161500--Sobic003G370000 Sobic007G161500--Sobic001G491000 Sobic001G289500 Sobic001G289500 Sobic007G161500--Sobic001G289500 Sobic007G161500--Sobic004G305800 Sobic007G161500--Sobic003G024300 Sobic006G244000--Sobic001G329400 Sobic006G244000--Sobic009G048900 Sobic003G256700 Sobic003G256700 Sobic006G244000--Sobic003G256700 Sobic006G244000--Sobic009G104800 Sobic008G104601 Sobic008G104601 Sobic006G244000--Sobic008G104601 Sobic004G125700 Sobic004G125700 Sobic006G244000--Sobic004G125700 Sobic003G431900 Sobic003G431900 Sobic006G244000--Sobic003G431900 Sobic001G406000 Sobic001G406000 Sobic006G244000--Sobic001G406000 Sobic001G134100 Sobic001G134100 Sobic006G244000--Sobic001G134100 Sobic003G026600--Sobic006G057866 Sobic002G136100 Sobic002G136100 Sobic003G026600--Sobic002G136100 Sobic002G370600 Sobic002G370600 Sobic003G026600--Sobic002G370600 Sobic003G255900 Sobic003G255900 Sobic003G026600--Sobic003G255900 Sobic003G371250 Sobic003G371250 Sobic003G026600--Sobic003G371250 Sobic003G327000 Sobic003G327000 Sobic003G026600--Sobic003G327000 Sobic001G317800 Sobic001G317800 Sobic003G026600--Sobic001G317800 Sobic001G200000 Sobic001G200000 Sobic003G026600--Sobic001G200000 Sobic003G026600--Sobic007G006400 Sobic004G112100--Sobic006G153400 Sobic004G112100--Sobic009G048900 Sobic004G112100--Sobic010G104800 Sobic004G112100--Sobic004G215800 Sobic009G256100 Sobic009G256100 Sobic004G112100--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G112100--Sobic003G097600 Sobic002G404800 Sobic002G404800 Sobic004G112100--Sobic002G404800 Sobic004G112100--Sobic007G006400 Sobic004G027600 Sobic004G027600 Sobic004G112100--Sobic004G027600 Sobic007G006400--Sobic003G097600 Sobic007G006400--Sobic010G104800 Sobic007G006400--Sobic006G153400 Sobic008G129900 Sobic008G129900 Sobic007G006400--Sobic008G129900 Sobic007G006400--Sobic004G112100 Sobic004G082300 Sobic004G082300 Sobic007G006400--Sobic004G082300 Sobic007G006400--Sobic009G256100 Sobic007G006400--Sobic004G059800 Sobic007G006400--Sobic003G127800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.